Pairwise Alignments

Query, 734 a.a., primosomal protein N' from Vibrio cholerae E7946 ATCC 55056

Subject, 739 a.a., primosome assembly protein from Pseudomonas putida KT2440

 Score =  692 bits (1785), Expect = 0.0
 Identities = 369/741 (49%), Positives = 489/741 (65%), Gaps = 11/741 (1%)

Query: 1   MRPSIARVCLPVPLDKSFDYLIPAHLFPVL---GGRVQVPFGRQTLVGIVQSLTHQSDFP 57
           M   I R+ LP PL + FDY  PA +  +    G R++VPFGR+ ++G++  +  QS+ P
Sbjct: 1   MSDVILRLALPSPLRRLFDYKAPASMARLTLTPGMRIRVPFGRREMIGVLIEVCTQSEVP 60

Query: 58  IEQLKSVQAVLDDAPVWPDKLQSLLHWCSQFYHYPLGETYANALPGALRKGKAAELTSHK 117
            ++LK   A+LD     P  L  L  W +Q+Y + LG+T + ALP  LR+G+AAE+   +
Sbjct: 61  ADKLKPASALLDPVSPIPASLFKLCLWTAQYYQHSLGDTLSWALPTLLRQGEAAEMRQER 120

Query: 118 EWRLTALGQEQLMQGVKRGAVKQAQVLHLLQHG-ALSHQTLLDEEVSSTTLKALVEKGWI 176
            W + A G       + R   ++  +  L QH   ++H  L    ++  +L  L+ K  +
Sbjct: 121 FWHI-APGARLEDPRIARAPRQRDALKTLAQHPHGVAHSLLAKLNLNKDSLDLLLAKDLV 179

Query: 177 ECEERKPVARPWPQELEAKVDKPRLNQEQAIAIAAV-NSQQGFGCFLLEGVTGSGKTEVY 235
           + E R+ +     +   A+ + P LN+EQ  A  AV     GFG FLL GVTGSGKTEVY
Sbjct: 180 QIETRRHLPALRHEHWLAQPELP-LNEEQREAFDAVCEGFGGFGAFLLAGVTGSGKTEVY 238

Query: 236 LNLITPVLARGEQALVLVPEIGLTPQTINRFRQRFNVPVEVMHSALNDTERLNAWLAARD 295
           L LI   L  G+QALVL+PEI L PQT+ RF QRFN  + ++HSA+ND ERL+AWLAARD
Sbjct: 239 LQLIRETLEAGKQALVLIPEINLGPQTLARFEQRFNARIALLHSAVNDRERLDAWLAARD 298

Query: 296 KVAGIVIGTRSALLTPFAKLGIIIVDEEHDSSYKQQDSLRYHARDVAVMRAHLENIPIVL 355
             A I+IGTRSAL TP    G+II+DEEHD SYKQQ+ LRYHARD+A++RAH ENIPI+L
Sbjct: 299 GEADIIIGTRSALFTPMKNPGLIIIDEEHDGSYKQQEGLRYHARDLALVRAHQENIPILL 358

Query: 356 GSATPALETLHNALSGKYHHLQLTQRAGNALPTRNHALDVKGLYLESGLSAPLIAEMRRH 415
           GSATP+LETLHNAL+G+Y  L++ QRAG A P R   LDVK L L+SG+S PL   +R+ 
Sbjct: 359 GSATPSLETLHNALTGRYRLLRMNQRAGGARPPRMLRLDVKSLPLDSGISGPLQQAIRQT 418

Query: 416 LSAGNQVMLFLNRRGFSPALMCHECGWIAECQRCDAYYTYHQHSNEMRCHHCGSQRPVLH 475
           L AG QV++FLNRRGF+P L+CH+CGW++EC RCDA  T HQ S  +RCHHCG    + H
Sbjct: 419 LEAGQQVLVFLNRRGFAPTLLCHDCGWLSECPRCDARMTVHQRSGVLRCHHCGYDERLPH 478

Query: 476 QCKGCGSTQLVTVGVGTEQLEAQLHTLFPEYRSVRIDRDSTRRKGSLESALTAIRKGEYQ 535
           QC  C    L  VG GTE+ E +L  LFP+Y  +R+DRDST RK ++ +  + I++G+  
Sbjct: 479 QCPQCNHVDLRPVGAGTERAEERLKVLFPDYPILRVDRDSTARKDAMHNLFSTIQRGQPS 538

Query: 536 ILIGTQMLAKGHHFPDVTLVALLDVDGSLYSSDFRASERLAQLFIQVAGRAGRASKPGEV 595
           IL+GTQMLAKGHHFP VTLVA+LD DG L+S DFRASER+AQL +QVAGRAGRA +PG+V
Sbjct: 539 ILVGTQMLAKGHHFPRVTLVAILDADGGLFSGDFRASERMAQLIVQVAGRAGRAEEPGKV 598

Query: 596 VLQTHHPEHSLLQALLHKDYHHFALTALEERKLAQLPPYSFLSLFRAEANHTAQVEDFLR 655
           ++QTH  +H LL  L  + Y  FA  AL+ER+ A LPPYS L+L RAEA+   Q E FL 
Sbjct: 599 IIQTHLADHPLLVQLTEQGYFAFAEQALDERRAAGLPPYSHLALLRAEAHKPGQAEGFLD 658

Query: 656 Q---VRETLRCNPWFDSECMVLGPTPAPLAKRAGKFRWQLLLQTPNRTLMQKILQSARPA 712
           +     E L           +LGP PAP+ +RAG+FR QLL+Q   R  + +++ +    
Sbjct: 659 EACAAAERLVAEQRLPG-IELLGPVPAPMERRAGRFRAQLLIQANTRAPLHRLISAWLLV 717

Query: 713 LQQLPLASKVRWSIDIDPQDL 733
           L+QLP   +VRWS+D+DP DL
Sbjct: 718 LEQLPSGRQVRWSLDVDPVDL 738