Pairwise Alignments

Query, 734 a.a., primosomal protein N' from Vibrio cholerae E7946 ATCC 55056

Subject, 755 a.a., Primosomal protein N' from Methylophilus sp. DMC18

 Score =  527 bits (1357), Expect = e-154
 Identities = 312/749 (41%), Positives = 446/749 (59%), Gaps = 35/749 (4%)

Query: 4   SIARVCLPVPLDKSFDYLIPAHLFPVLGGRVQVPFGRQTLVGIVQSLTHQSDFPIEQLKS 63
           SI RV L VPLD+ FDYL P  +  V G RV VPF  + LVGIV +L +++D P+ +LK+
Sbjct: 15  SIVRVVLDVPLDREFDYLNPGLVIKV-GNRVVVPFAGRQLVGIVMALVNETDIPLHKLKA 73

Query: 64  VQAVLDDAPVWPDKLQSLLHWCSQFYHYPLGETYANALPGALRKGKAAELTSHKEWRLTA 123
           V  V DD P+     + LL +C+ +YHYP G+T  ++LP  LR+ K A   S K W L  
Sbjct: 74  VLQVFDDVPLDAASFK-LLRFCADYYHYPFGQTVLSSLPLRLRQIKPA--VSRKMW-LYH 129

Query: 124 LGQEQLMQGVKRGAVKQAQVLHLLQHGALSHQTLLDEEVSSTTLKAL---VEKGWIECEE 180
           L Q      + +     A++L LL+  A   + +L   VS+T  KAL   ++ G++    
Sbjct: 130 LAQPVPDALIGKRQQVLARLLALLKQHAECSEAML-AAVSATWRKALQPLLDGGYVN--- 185

Query: 181 RKPVARPWPQELEAKVDKPRLNQEQAIAIAAVNSQ-QGFGCFLLEGVTGSGKTEVYLNLI 239
           R+ V    P  + A    P LN EQA A+ A+  +  GF  +LL G+TGSGKTEVY+ L+
Sbjct: 186 RREVIATRPS-MPASAQVPELNDEQAAAVEAILGRLHGFQPWLLFGITGSGKTEVYIRLL 244

Query: 240 TPVLARGE-QALVLVPEIGLTPQTINRFRQRFN-VPVEVMHSALNDTERLNAWLAARDKV 297
             VLA  + Q L++VPEI LTPQ  +RFR R +   +  +HS L+++ERL  W AA+   
Sbjct: 245 EKVLADPQSQVLIMVPEINLTPQLESRFRSRLSEYALVTLHSHLSESERLQNWQAAQSGA 304

Query: 298 AGIVIGTRSALLTPFAKLGIIIVDEEHDSSYKQQDSLRYHARDVAVMRAHLENIPIVLGS 357
           A IVIGTR ++ TP   L ++I+DEEHDSSYKQQD +RYHARDVA++RA    +P+VLGS
Sbjct: 305 ARIVIGTRLSVFTPMPHLKLMILDEEHDSSYKQQDGMRYHARDVALVRAKQHGVPVVLGS 364

Query: 358 ATPALETLHNALSGKYHH---------LQLTQRA-GNALPTRNHALDVKGLYLESGLSAP 407
           ATP+LE+ +NA   + H          L L +RA   A   R   +D      E+GL+  
Sbjct: 365 ATPSLESWYNATGDQEHAGGRKPIYRLLTLNKRAVSQATLPRIFCIDTAHPPPEAGLTPL 424

Query: 408 LIAEMRRHLSAGNQVMLFLNRRGFSPALMCHECGWIAECQRCDAYYTYHQHSNEMRCHHC 467
           L   + + L  G Q +LF+NRRG++P L C  C W+A+C+RC A    H     +RCHHC
Sbjct: 425 LKQAIEQRLQRGEQSLLFINRRGYAPVLHCSACQWLADCRRCSAKAVLHLRQRVLRCHHC 484

Query: 468 GSQRPVLHQCKGCGSTQLVTVGVGTEQLEAQLHTLFPEYRSVRIDRDSTRRKGSLESALT 527
           G ++P+  QC  CG+  L  VG  T+++E  L  +FP+ R  R+DRD+ + K +L + L+
Sbjct: 485 GDEQPIPLQCPSCGNPDLRPVGQATQRIEETLQQVFPQARVARVDRDTIQAKDALTTLLS 544

Query: 528 AIRKGEYQILIGTQMLAKGHHFPDVTLVALLDVDGSLYSSDFRASERLAQLFIQVAGRAG 587
            +  GE  IL+GTQMLAKGH F ++TLV +LD D +LYS D+RASERL    +QVAGRAG
Sbjct: 545 EVHAGEIDILVGTQMLAKGHDFANLTLVGVLDTDSALYSPDYRASERLFAQLMQVAGRAG 604

Query: 588 RASKPGEVVLQTHHPEHSLLQALLHKDYHHFALTALEERKLAQLPPYSFLSLFRAEANHT 647
           R  KPGEV++QT  P+H L  AL  ++Y  FA   L+ER   Q PP +++++ +AEA   
Sbjct: 605 RGEKPGEVLIQTAFPQHPLFAALREQNYAEFAQALLQERMAMQFPPATYIAVMKAEATEY 664

Query: 648 AQVEDFLRQVRETLRCNPWFDSEC-------MVLGPTPAPLAKRAGKFRWQLLLQTPNRT 700
           A V  FL +   +L    + D          ++  P    LA+     R  +++Q+ +R 
Sbjct: 665 ALVNQFLTEF--SLAARAYVDQHAATLPDQPLIYDPVRPGLARLNRMERGYVMMQSAHRN 722

Query: 701 LMQKILQSARPALQQLPLASKVRWSIDID 729
            +Q++LQ A   ++  PL +K+RW +D+D
Sbjct: 723 ALQQLLQVAVAWVRAHPLQAKIRWVLDVD 751