Pairwise Alignments

Query, 734 a.a., primosomal protein N' from Vibrio cholerae E7946 ATCC 55056

Subject, 732 a.a., Helicase PriA essential for oriC/DnaA-independent DNA replication from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  787 bits (2032), Expect = 0.0
 Identities = 401/729 (55%), Positives = 511/729 (70%), Gaps = 3/729 (0%)

Query: 4   SIARVCLPVPLDKSFDYLIPAHLFPVLGGRVQVPFGRQT-LVGIVQSLTHQSDFPIEQLK 62
           S+A V LPVPL ++FDYL+P       G RV+VPFG+Q   VGIV S++  S+ P+++LK
Sbjct: 2   SVAHVALPVPLPRTFDYLLPEGGVAKAGCRVRVPFGKQQERVGIVVSISDHSELPLDELK 61

Query: 63  SVQAVLDDAPVWPDKLQSLLHWCSQFYHYPLGETYANALPGALRKGKAAELTSHKEWRLT 122
           SV  +LD+ P++   +  LL W + +YH+PLG+   +ALP  LR+GK A       W  T
Sbjct: 62  SVIEILDNEPIFSPSIWRLLLWAADYYHHPLGDVLFHALPVLLRQGKPASNAPLWYWFAT 121

Query: 123 ALGQEQLMQGVKRGAVKQAQVLHLLQHGALSHQTLLDEEVSSTTLKALVEKGWIECEERK 182
             GQ   +  +KR A KQ Q L  L+ G +    + + + +  TL+ L  KG  E     
Sbjct: 122 EEGQAVDINSLKRSA-KQQQALAALRQGKIWRYQVAELDFTDATLQTLRRKGLCELASET 180

Query: 183 PVARPWPQELEAKVDKPRLNQEQAIAIAAVNS-QQGFGCFLLEGVTGSGKTEVYLNLITP 241
           P    W +      ++ RLN EQA A+ A++S   GF  +LL GVTGSGKTEVYL+++  
Sbjct: 181 PAFTDWRERYAVAGERLRLNTEQATAVGAIHSASDGFSAWLLAGVTGSGKTEVYLSVLEN 240

Query: 242 VLARGEQALVLVPEIGLTPQTINRFRQRFNVPVEVMHSALNDTERLNAWLAARDKVAGIV 301
           VLA+G+QALV+VPEIGLTPQTI RFR+RFN PVEV+HS LND+ERL+AWL A++  A IV
Sbjct: 241 VLAQGKQALVMVPEIGLTPQTIARFRERFNAPVEVLHSGLNDSERLSAWLKAKNGEAAIV 300

Query: 302 IGTRSALLTPFAKLGIIIVDEEHDSSYKQQDSLRYHARDVAVMRAHLENIPIVLGSATPA 361
           IGTRS+L TPF  LG+I++DEEHDSSYKQQ+  RYHARD+AV RAH E IPI+LGSATPA
Sbjct: 301 IGTRSSLFTPFKNLGVIVIDEEHDSSYKQQEGWRYHARDLAVYRAHSEQIPIILGSATPA 360

Query: 362 LETLHNALSGKYHHLQLTQRAGNALPTRNHALDVKGLYLESGLSAPLIAEMRRHLSAGNQ 421
           LETL N    KY  L+LT+RAGNA P   H LD+KG  L++GL+  LIA MR+HL A NQ
Sbjct: 361 LETLCNVRQKKYRMLRLTRRAGNARPALQHVLDLKGQRLQAGLAPALIARMRQHLQADNQ 420

Query: 422 VMLFLNRRGFSPALMCHECGWIAECQRCDAYYTYHQHSNEMRCHHCGSQRPVLHQCKGCG 481
           V+LFLNRRGF+PAL+CH+CGWIAEC RCD YYT HQ  + +RCHHC SQRPV  QC  CG
Sbjct: 421 VILFLNRRGFAPALLCHDCGWIAECPRCDHYYTLHQAQHHLRCHHCDSQRPVPRQCPSCG 480

Query: 482 STQLVTVGVGTEQLEAQLHTLFPEYRSVRIDRDSTRRKGSLESALTAIRKGEYQILIGTQ 541
           ST ++ VG+GTEQLE  L   FP     RIDRD+T RKG+LE  L  + +G  +ILIGTQ
Sbjct: 481 STHMLPVGLGTEQLEQVLAPFFPGVPISRIDRDTTSRKGALEQHLAEVHRGGARILIGTQ 540

Query: 542 MLAKGHHFPDVTLVALLDVDGSLYSSDFRASERLAQLFIQVAGRAGRASKPGEVVLQTHH 601
           MLAKGHHFPDVTLVALLDVDG+L+S+DFR++ER AQL+ QV+GRAGRA K GEVVLQTHH
Sbjct: 541 MLAKGHHFPDVTLVALLDVDGALFSADFRSAERFAQLYTQVSGRAGRAGKQGEVVLQTHH 600

Query: 602 PEHSLLQALLHKDYHHFALTALEERKLAQLPPYSFLSLFRAEANHTAQVEDFLRQVRETL 661
           PEH LLQ LL+K Y  FA  AL ER+  QLPP++   + RAE ++  Q   FL+Q+R  +
Sbjct: 601 PEHPLLQTLLYKGYDAFAEQALAERQTLQLPPWTSHVIIRAEDHNNQQAPVFLQQLRNLI 660

Query: 662 RCNPWFDSECMVLGPTPAPLAKRAGKFRWQLLLQTPNRTLMQKILQSARPALQQLPLASK 721
           + +P  D +  +LGP PA   KR G++RWQ+LLQ P+R  +Q I+      +  LP A K
Sbjct: 661 QASPLSDDKLWILGPVPALAPKRGGRYRWQILLQHPSRIRLQHIISGTLALINTLPEARK 720

Query: 722 VRWSIDIDP 730
           V+W +D+DP
Sbjct: 721 VKWVLDVDP 729