Pairwise Alignments

Query, 734 a.a., primosomal protein N' from Vibrio cholerae E7946 ATCC 55056

Subject, 1147 a.a., transcription-repair coupling factor from Erwinia tracheiphila SCR3

 Score = 57.8 bits (138), Expect = 3e-12
 Identities = 49/155 (31%), Positives = 72/155 (46%), Gaps = 15/155 (9%)

Query: 222 LLEGVTGSGKTEVYLNLITPVLARGEQALVLVPEIGLTPQTINRFRQRF---NVPVEVMH 278
           L+ G  G GKTEV +      +   +Q  VLVP   L  Q  + FR RF    V +EV+ 
Sbjct: 625 LVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEVLS 684

Query: 279 SALNDTERLNAWLAARDKVAGIVIGTRSALLT--PFAKLGIIIVDEEHDSSYKQQDSLRY 336
                 E+       ++    I+IGT   L +   +  LG++IVDEEH    +       
Sbjct: 685 RFRTAKEQAQVLNDTQEGKVDILIGTHKLLQSEIKWRDLGLLIVDEEHRFGVR------- 737

Query: 337 HARDVAVMRAHLENIPIVLGSATPALETLHNALSG 371
           H   +  MRA   ++ I+  +ATP   TL+ A+SG
Sbjct: 738 HKERIKAMRA---DVDILTLTATPIPRTLNMAMSG 769



 Score = 27.3 bits (59), Expect = 0.005
 Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 13/111 (11%)

Query: 493 EQLEAQLHTLFPEYRSVRIDRDSTRRKGSLESALTAIRKGEYQILIGTQMLAKGHHFPDV 552
           E+   +L  L PE R + I     R +  LE  +       + +L+ T ++  G   P  
Sbjct: 823 EKATRRLAELVPEAR-IAIGHGQMRER-ELERVMNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 553 TLVALLDVDGSLYSSDFRASERLAQLFIQVAGRAGRASKPGEVVLQTHHPE 603
             + +   D             LAQL  Q+ GR GR+       L T HP+
Sbjct: 881 NTIIIERADHF----------GLAQLH-QLRGRVGRSHHQAYAWLLTPHPK 920