Pairwise Alignments

Query, 734 a.a., primosomal protein N' from Vibrio cholerae E7946 ATCC 55056

Subject, 732 a.a., primosomal protein N' from Escherichia coli ECRC62

 Score =  774 bits (1998), Expect = 0.0
 Identities = 396/728 (54%), Positives = 506/728 (69%), Gaps = 3/728 (0%)

Query: 5   IARVCLPVPLDKSFDYLIPAHLFPVLGGRVQVPFGRQT-LVGIVQSLTHQSDFPIEQLKS 63
           +A V LPVPL ++FDYL+P  +    G RV+VPFG+Q   +G+V S++  S+ P+ +LK+
Sbjct: 3   VAHVALPVPLPRTFDYLLPEGMTVKAGCRVRVPFGKQQERIGVVVSVSDVSELPLNELKA 62

Query: 64  VQAVLDDAPVWPDKLQSLLHWCSQFYHYPLGETYANALPGALRKGKAAELTSHKEWRLTA 123
           V  VLD  PV+   +  LL W + +YH+P+G+   +ALP  LR+G+ A       W  T 
Sbjct: 63  VVEVLDVEPVFTHSVWRLLLWAADYYHHPIGDVLFHALPILLRQGRPAANAPMWYWFATE 122

Query: 124 LGQEQLMQGVKRGAVKQAQVLHLLQHGALSHQTLLDEEVSSTTLKALVEKGWIECEERKP 183
            GQ   +  +KR   KQ Q L  L+ G +    + + E +   L+AL +KG  +     P
Sbjct: 123 QGQAVDLNSLKRSP-KQQQALAALRQGKIWRDQVAELEFNDAALQALRKKGLCDLASETP 181

Query: 184 VARPWPQELEAKVDKPRLNQEQAIAIAAVNSQQG-FGCFLLEGVTGSGKTEVYLNLITPV 242
               W        ++ RLN EQA A+ A++S    F  +LL GVTGSGKTEVYL+++  V
Sbjct: 182 EFSDWRTNYAVSGERLRLNTEQATAVGAIHSAADTFSAWLLAGVTGSGKTEVYLSVLENV 241

Query: 243 LARGEQALVLVPEIGLTPQTINRFRQRFNVPVEVMHSALNDTERLNAWLAARDKVAGIVI 302
           LA+G+QALV+VPEIGLTPQTI RFR+RFN PVEV+HS LND+ERL+AWL A++  A IVI
Sbjct: 242 LAQGKQALVMVPEIGLTPQTIARFRERFNAPVEVLHSGLNDSERLSAWLKAKNGEAAIVI 301

Query: 303 GTRSALLTPFAKLGIIIVDEEHDSSYKQQDSLRYHARDVAVMRAHLENIPIVLGSATPAL 362
           GTRSAL TPF  LG+I++DEEHDSSYKQQ+  RYHARD+AV RAH E IPI+LGSATPAL
Sbjct: 302 GTRSALFTPFKNLGVIVIDEEHDSSYKQQEGWRYHARDLAVYRAHSEQIPIILGSATPAL 361

Query: 363 ETLHNALSGKYHHLQLTQRAGNALPTRNHALDVKGLYLESGLSAPLIAEMRRHLSAGNQV 422
           ETL N    KY  L+LT+RAGNA P   H LD+KG  +++GL+  LI  MR+HL A NQV
Sbjct: 362 ETLCNVQQKKYRLLRLTRRAGNARPAIQHVLDLKGQKVQAGLAPALITRMRQHLQANNQV 421

Query: 423 MLFLNRRGFSPALMCHECGWIAECQRCDAYYTYHQHSNEMRCHHCGSQRPVLHQCKGCGS 482
           +LFLNRRGF+PAL+CH+CGWIAEC RCD YYT HQ    +RCHHC SQRPV  QC  CGS
Sbjct: 422 ILFLNRRGFAPALLCHDCGWIAECPRCDHYYTLHQAQQHLRCHHCDSQRPVPRQCPSCGS 481

Query: 483 TQLVTVGVGTEQLEAQLHTLFPEYRSVRIDRDSTRRKGSLESALTAIRKGEYQILIGTQM 542
           T LV VG+GTEQLE  L  LFP+    RIDRD+T RKG+LE  L  + +G  +ILIGTQM
Sbjct: 482 THLVPVGLGTEQLEQTLAPLFPDVPISRIDRDTTSRKGALEQQLAEVHRGGARILIGTQM 541

Query: 543 LAKGHHFPDVTLVALLDVDGSLYSSDFRASERLAQLFIQVAGRAGRASKPGEVVLQTHHP 602
           LAKGHHFPDVTLVALLDVDG+L+S+DFR++ER AQL+ QVAGRAGRA K GEVVLQTHHP
Sbjct: 542 LAKGHHFPDVTLVALLDVDGALFSADFRSAERFAQLYTQVAGRAGRAGKQGEVVLQTHHP 601

Query: 603 EHSLLQALLHKDYHHFALTALEERKLAQLPPYSFLSLFRAEANHTAQVEDFLRQVRETLR 662
           EH LLQ LL+K Y  FA  AL ER++ QLPP++   + RAE ++      FL+Q+R  + 
Sbjct: 602 EHPLLQTLLYKGYDAFAEQALAERRMMQLPPWTSHVIVRAEDHNNQHAPLFLQQLRNLIL 661

Query: 663 CNPWFDSECMVLGPTPAPLAKRAGKFRWQLLLQTPNRTLMQKILQSARPALQQLPLASKV 722
            +P  D +  VLGP PA   KR G++RWQ+LLQ P+R  +Q I+      +  +P + KV
Sbjct: 662 SSPLADDKLWVLGPVPALAPKRGGRWRWQILLQHPSRVRLQHIISGTLALINTIPDSRKV 721

Query: 723 RWSIDIDP 730
           +W +D+DP
Sbjct: 722 KWVLDVDP 729