Pairwise Alignments

Query, 734 a.a., primosomal protein N' from Vibrio cholerae E7946 ATCC 55056

Subject, 820 a.a., primosomal protein N' from Bacteroides stercoris CC31F

 Score =  340 bits (873), Expect = 1e-97
 Identities = 241/754 (31%), Positives = 380/754 (50%), Gaps = 53/754 (7%)

Query: 2   RPSIARVCLPVPLDKSFDYLIPAHLFPVLGGRVQVPFGRQTLVGIVQSLTHQSDFPIEQL 61
           R  + +  LP  L    + ++  +  P     VQ+P   Q ++ ++ +   Q    +E+ 
Sbjct: 94  RGDVYKAALPSGLKLESETIVEYN--PDFESDVQLPEKEQKILDLLAAEPEQCITKLEKE 151

Query: 62  KSVQAVLDDAPVWPDKLQSLLHWCSQFYHYPLGETYANALPGALRKGKAAELTSHKEWRL 121
             ++ +L         ++SLL   + F    L  TY       +R  +AA      E RL
Sbjct: 152 SGIRNILS-------VIKSLLDKEAVFVKEELKRTYKPKTETRVRLTEAAG----NEHRL 200

Query: 122 TALGQEQLMQGVKRGAVKQAQVLHLLQHGALS------------HQTLLDEEVSSTTLKA 169
                E     ++R A KQ  +L  +++  LS             + L     +      
Sbjct: 201 HFFFDE-----LQRRAPKQLDLL--MKYIELSACLGTTPKEVTKKELLQRTSATPAVFNG 253

Query: 170 LVEKGWIECEERKPVARPWPQELEAKVDKPRLNQEQAIAI-AAVNSQQGFGCFLLEGVTG 228
           LVE+G  E  +++ + R         +    LN  Q  A  + V S +     LL GVT 
Sbjct: 254 LVERGVFEVYQQE-IGRLNAAAARTTLPLNPLNGHQQRAYDSIVESFRTKNVCLLHGVTS 312

Query: 229 SGKTEVYLNLITPVLARGEQALVLVPEIGLTPQTINRFRQRFNVPVEVMHSALNDTERLN 288
           SGKTE+Y++LI  V+ +G+Q L L+PEI LT Q   R ++ F   + + HS   D ER+ 
Sbjct: 313 SGKTEIYIHLIEKVIRQGKQVLYLLPEIALTTQITERLQRVFGSRLGIYHSKFPDAERVE 372

Query: 289 AWLAARDKVAG----IVIGTRSALLTPFAKLGIIIVDEEHDSSYKQQDSL-RYHARDVAV 343
            W   + +++G    I++G RS++  PF KLG++IVDEEH+++YKQQD   RYHAR+ A 
Sbjct: 373 IW---QKQLSGSGYDIILGVRSSVFLPFRKLGLVIVDEEHENTYKQQDPAPRYHARNAAT 429

Query: 344 MRAHLENIPIVLGSATPALETLHNALSGKYHHLQLTQRAGNALPTRNHALDVKGLYLESG 403
           + A L     +LG+ATP++ET HNA+SGKY  ++L +R           +D+K L  +  
Sbjct: 430 VLAALYGAKTLLGTATPSIETWHNAMSGKYGLVELKERYKEIQLPEIIPVDIKELQRKKR 489

Query: 404 LSAP----LIAEMRRHLSAGNQVMLFLNRRGFSPALMCHECGWIAECQRCDAYYTYHQHS 459
           ++ P    L+  +R  L    QV+LF NRRGF+P + CH CGW+ +C+ CD   TYH+  
Sbjct: 490 MNGPFSPLLLQYVREALERKEQVILFQNRRGFAPMIECHTCGWVPKCKNCDVSLTYHKGL 549

Query: 460 NEMRCHHCGSQRPVLHQCKGCGSTQLVTVGVGTEQLEAQLHTLFPEYRSVRIDRDSTRRK 519
           N++ CH+CG    +   C  C  T L   G GTE++E  +  LFPE    R+D D+TR +
Sbjct: 550 NQLTCHYCGYTYQLPRICPACEGTDLRNRGFGTEKIEDDVKLLFPEATVARMDLDTTRTR 609

Query: 520 GSLESALTAIRKGEYQILIGTQMLAKGHHFPDVTLVALLDVDGSLYSSDFRASERLAQLF 579
            + E  +    +G+  ILIGTQM++KG  F  V++V +L+ D  L   DFRA ER  QL 
Sbjct: 610 AAYERIIADFEQGKTDILIGTQMVSKGLDFDHVSVVGILNADTMLNYPDFRAYERAFQLM 669

Query: 580 IQVAGRAGRASKPGEVVLQTHHPEHSLLQALLHKDYHHFALTALEERKLAQLPPYSFLSL 639
            QVAGRAGR +K G VVLQT   EH ++  ++  DY       L ER++   PPY  L  
Sbjct: 670 AQVAGRAGRKNKRGRVVLQTKSIEHPIIPQVIANDYEGMVDGQLAERQMFHYPPYYRLIY 729

Query: 640 FRAEANHTAQVEDFLRQVRETLRCNPWFDSECMVLGPTPAPLAKRAGKFRWQLLLQTPNR 699
              +  + A ++   + +   LR    F +   VLGP   P+A+    F  +++++   +
Sbjct: 730 VYLKNRNEALLDLMAQTMAGKLRA--IFGNR--VLGPDKPPVARVQTLFIRKIVVKIETK 785

Query: 700 TLMQKILQSARPALQQLPLASKVRWSI---DIDP 730
             M ++ +      +++ +  + +  I   D+DP
Sbjct: 786 APMARVRELLLQVQKEMIMEDRFKSLIVYYDVDP 819



 Score = 52.0 bits (123), Expect = 1e-10
 Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 2/101 (1%)

Query: 8   VCLPVPLDKSFDYLIPAHLFPV--LGGRVQVPFGRQTLVGIVQSLTHQSDFPIEQLKSVQ 65
           V LP+PL   F Y +P  +  +  +G RV VPFGR+     +    H S     ++K V 
Sbjct: 7   VILPLPLHACFTYSLPEDMAGIVQIGCRVVVPFGRKKYYTAIVQNIHYSAPAGYEVKEVS 66

Query: 66  AVLDDAPVWPDKLQSLLHWCSQFYHYPLGETYANALPGALR 106
           A+LD  P+   +      W + +Y    G+ Y  ALP  L+
Sbjct: 67  ALLDAHPILLPEQFRFWDWLADYYLCTRGDVYKAALPSGLK 107