Pairwise Alignments

Query, 734 a.a., primosomal protein N' from Vibrio cholerae E7946 ATCC 55056

Subject, 1137 a.a., Transcription-repair-coupling factor from Azospirillum sp. SherDot2

 Score = 63.9 bits (154), Expect = 4e-14
 Identities = 67/232 (28%), Positives = 100/232 (43%), Gaps = 25/232 (10%)

Query: 152 LSHQTLLDEEVSSTTLKALVEKGWIECEERKPVARPWPQELEAKVDK----PRLNQEQAI 207
           L  + +L+ E+  T  K ++ +      E  PV  P    +     +    P   Q +AI
Sbjct: 542 LERRAVLEAEIGETA-KGILREARRRARESAPVIDPPVDRMRRFGARFGFDPTEGQRRAI 600

Query: 208 AIAAVNSQQGFGC-FLLEGVTGSGKTEVYLNLITPVLARGEQALVLVPEIGLTPQTINRF 266
                  +QG     L+    G GKTEV L     V   G Q  V+ P   L  Q +  F
Sbjct: 601 QTVLDAMRQGQPMDHLVCADVGYGKTEVALRAAAAVAFAGHQVAVMAPTSVLARQHLEVF 660

Query: 267 RQR---FNVPVEVMHSALNDTE--RLNAWLAARDKVAGIVIGTRSALL--TPFAKLGIII 319
           R+R   F + +E +  A+  TE  R+ A LA  D    IVIGT + L     F +LG+++
Sbjct: 661 RRRFAGFGIRLEPLTGAMTKTESDRVRAGLA--DGSVDIVIGTHALLSKDVRFQRLGLMV 718

Query: 320 VDEEHDSSYKQQDSLRYHARDVAVMRAHLENIPIVLGSATPALETLHNALSG 371
           VDEE           R+ A     ++  ++ +  +  SATP   TL  AL+G
Sbjct: 719 VDEEQ----------RFGATQKQALKRRIKGVHSLALSATPIPRTLQGALAG 760