Pairwise Alignments

Query, 734 a.a., primosomal protein N' from Vibrio cholerae E7946 ATCC 55056

Subject, 1165 a.a., Transcription-repair-coupling factor from Alteromonas macleodii MIT1002

 Score = 62.8 bits (151), Expect = 1e-13
 Identities = 54/176 (30%), Positives = 80/176 (45%), Gaps = 18/176 (10%)

Query: 204 EQAIAIAAVNSQQGFGCF---LLEGVTGSGKTEVYLNLITPVLARGEQALVLVPEIGLTP 260
           +QA AIAAV    G       L+ G  G GKTEV +         G+Q  +LVP   L  
Sbjct: 622 DQAQAIAAVMHDMGSPSAMDRLVCGDVGFGKTEVAMRAAFLAANAGKQVAILVPTTLLAQ 681

Query: 261 QTINRFRQRFNV---PVEVMHSALNDTERLNAWLAARDKVAGIVIGTRSALLTP--FAKL 315
           Q    F+ RF      +EVM   ++   + +      +    IV+GT   L +   +  L
Sbjct: 682 QHYENFKDRFAAWPFEIEVMSRFVSGKAQKSVVERIGEGKVDIVVGTHKLLSSDINYKDL 741

Query: 316 GIIIVDEEHDSSYKQQDSLRYHARDVAVMRAHLENIPIVLGSATPALETLHNALSG 371
           G++I+DEEH    +Q++ L+    DV ++            +ATP   TL+ ALSG
Sbjct: 742 GLVIIDEEHRFGVRQKEKLKSLRADVDILTL----------TATPIPRTLNMALSG 787



 Score = 27.7 bits (60), Expect = 0.004
 Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 11/93 (11%)

Query: 518 RKGSLESALTAIRKGEYQILIGTQMLAKGHHFPDVTLVALLDVDGSLYSSDFRASERLAQ 577
           R+  LE  ++      Y +L+ T ++  G   P    + +   D             LAQ
Sbjct: 864 RERELEGVMSDFYHQRYNVLVCTTIIETGIDVPSANTIIMDRADHL----------GLAQ 913

Query: 578 LFIQVAGRAGRASKPGEVVLQTHHPEHSLLQAL 610
           L  Q+ GR GR+       L T HP+     A+
Sbjct: 914 LH-QLRGRVGRSHHQAYAYLLTPHPKRMTKDAV 945