Pairwise Alignments

Query, 734 a.a., primosomal protein N' from Vibrio cholerae E7946 ATCC 55056

Subject, 738 a.a., primosomal protein N' from Agrobacterium fabrum C58

 Score =  374 bits (961), Expect = e-108
 Identities = 256/736 (34%), Positives = 380/736 (51%), Gaps = 36/736 (4%)

Query: 8   VCLPVPLDKSFDYLIPAHLFPVLGGRVQVPFGRQTLVGIVQSLTHQSDFPIEQLKSVQAV 67
           V +P+P    + Y +P  +    G  VQVP G + + G+V     +     ++L+ +   
Sbjct: 24  VLVPLPAPGPYSYAVPEDMVVETGSVVQVPLGPRQVFGVVWDDAGEKGVDPKKLRPITKS 83

Query: 68  LDDAPVWPDKLQSLLHWCSQFYHYPLGETYANAL--PGALRKGKAAE---LTSHKEWRLT 122
            +  P+  + ++  + W + +   P G     AL  P A       E   LT  +  RLT
Sbjct: 84  FECPPLKVE-MRRFVDWVAAYTLSPPGLVARMALRAPAAFDPEPMIEGLRLTEGRPERLT 142

Query: 123 ALGQEQLMQGVKRGAVKQAQVLHLLQHGALSHQTLLDEEVSSTTLKALVEKGWIEC---E 179
              +E++M+    G   Q      L H A          VS++ +  LV++G  E     
Sbjct: 143 P-ARERVMELAAEG---QGWTKSGLAHAA---------GVSTSVIDGLVKQGVFETVFLP 189

Query: 180 ERKPVARPWPQELEAKVDKPRLNQEQAIAIAAVNSQQGFGCFLLEGVTGSGKTEVYLNLI 239
               VA P P  +E +++ P+  ++ A  I     + GF   L++GVTGSGKTEVY   +
Sbjct: 190 APPVVAEPDPDYVEPRLEGPQ--KQAASEIIEDVRKGGFHVSLIDGVTGSGKTEVYFEAV 247

Query: 240 TPVLARGEQALVLVPEIGLTPQTINRFRQRFNVPVEVMHSALNDTERLNAWLAARDKVAG 299
              L +G+Q L+L+PEI LT   + RF+ RF       HS L+   R   W  A      
Sbjct: 248 AETLRQGKQVLILLPEIALTAAFLERFQDRFGAKPAEWHSDLSPRMREKVWRQAVTGEIK 307

Query: 300 IVIGTRSALLTPFAKLGIIIVDEEHDSSYKQQDSLRYHARDVAVMRAHLENIPIVLGSAT 359
           +V G RSAL  PF  LG+IIVDEEHD +YKQ+D + Y+ARD+AV+RA +   P+VL SAT
Sbjct: 308 VVAGARSALFLPFDNLGLIIVDEEHDPAYKQEDRVFYNARDMAVVRARIAEFPVVLVSAT 367

Query: 360 PALETLHNALSGKYHHLQLTQRAGNALPTRNHALDVKGLYLESG--LSAPLIAEMRRHLS 417
           P++E+  N  SG+Y+ + L  R G+A     H +D++    E G  LS  L+  + + + 
Sbjct: 368 PSVESQVNGSSGRYNTIHLHTRFGDAAMPDLHLVDMRRHPPERGGFLSPVLLRGIGKTIE 427

Query: 418 AGNQVMLFLNRRGFSPALMCHECGWIAECQRCDAYYTYHQHSNEMRCHHCGSQRPVLHQC 477
            G Q +LFLNRRG++P  +C  CG   +C +C ++   H+  N+++CH CG   P    C
Sbjct: 428 KGEQSLLFLNRRGYAPLTLCRVCGHRFQCPQCSSWLVEHRFRNQLQCHQCGHNEPTPDHC 487

Query: 478 KGCGS-TQLVTVGVGTEQLEAQLHTLFPEYRSVRIDRDSTRRKGSLESALTAIRKGEYQI 536
             CG+   LV  G G E++  ++   FPE R++ +  D    K  L   L AI KGE  I
Sbjct: 488 PECGTFDHLVACGPGVERIAEEVEKHFPEARTIVLSSDLMGVK-RLRLELEAIVKGEADI 546

Query: 537 LIGTQMLAKGHHFPDVTLVALLDVDGSLYSSDFRASERLAQLFIQVAGRAGRASKPGEVV 596
           +IGTQ++AKGH+FP +TLV ++D D  L + D RA+ER  QL  QV GRAGR       +
Sbjct: 547 VIGTQLVAKGHNFPLMTLVGIVDADLGLANGDPRAAERTFQLLSQVTGRAGRTGLKSHGL 606

Query: 597 LQTHHPEHSLLQALLHKDYHHFALTALEERKLAQLPPYSFLSLFRAEANHTAQVEDFLRQ 656
           LQT+ P+H ++QA++  D   F    + ER+ A LPP+  L+     A+  A+ E   R 
Sbjct: 607 LQTYQPQHPVMQAIVSGDASAFYEREIVEREKAVLPPFGRLASIIVSADTRAEAETHARG 666

Query: 657 VRETLRCNPWFDSECMVLGPTPAPLAKRAGKFRWQLLLQTPNRTLMQKILQSARPALQQL 716
           +R      P   +  M+LGP  APLA   G+ R++LL+     + MQ  L   R  L   
Sbjct: 667 LRAAA---PQV-TGIMLLGPAEAPLALIRGRHRFRLLVHGRRNSDMQSFL---RTLLASG 719

Query: 717 PL-ASKVRWSIDIDPQ 731
           P     V   +DIDPQ
Sbjct: 720 PKERGSVHVQLDIDPQ 735