Pairwise Alignments

Query, 335 a.a., DNA-binding transcriptional regulator CytR from Vibrio cholerae E7946 ATCC 55056

Subject, 346 a.a., HTH-type transcriptional repressor CytR from Xanthobacter sp. DMC5

 Score =  179 bits (453), Expect = 1e-49
 Identities = 113/333 (33%), Positives = 173/333 (51%), Gaps = 4/333 (1%)

Query: 2   ATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKT 61
           AT++DVAQLAGVSTATVSRAL  P+ V   T  RV +A+    Y P   AR L   ++ T
Sbjct: 7   ATLQDVAQLAGVSTATVSRALSRPDLVQEETLARVSDAISRLNYVPGGAARALASGKTLT 66

Query: 62  IVAIVPDICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLL 121
           I A+VP +    F+  I+ ++     +GY +L+        +E + V  +  +  D +++
Sbjct: 67  IGAVVPTLDHAIFARAIQAMQTELAGNGYQLLVAAHDYAPAQEAAAVRAMLARGVDALMV 126

Query: 122 LGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDNLTSAFEAVNYLTQLGHKRIAQ 181
           +G D   +          P+V++  F  +  LP +  DN  + +   ++L  LGH+R   
Sbjct: 127 VGADHLEETWALLTTASVPVVLSWSF--DARLPAIGFDNEKAGWLIADHLLDLGHRRFGM 184

Query: 182 ISGPQHA-ALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA 240
           ISG  HA    + R  G + AL   G+ +  +      FT   G   + +L+A    PTA
Sbjct: 185 ISGFTHANDRARSRVAGVRAALAARGLELPSSCVVEAPFTLAGGRAGLAELMARATPPTA 244

Query: 241 IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAM 300
           + C ND +A GA+ EA+  G+ VP  LSVVG D+++ A +  PPLTT+  P  E+GR   
Sbjct: 245 VVCGNDLLAAGALFEAQASGIAVPGALSVVGIDNLEIAAHLAPPLTTVHLPTTELGRTVA 304

Query: 301 LMMLELLRGHDVRAGSRLLETKLVVRESAAPPS 333
             +L  LRG + +     L  +LV+R SA  P+
Sbjct: 305 RHLLARLRG-EAQPHRVELPIELVIRRSATAPA 336