Pairwise Alignments

Query, 335 a.a., DNA-binding transcriptional regulator CytR from Vibrio cholerae E7946 ATCC 55056

Subject, 344 a.a., Transcriptional regulator, LacI family from Variovorax sp. SCN45

 Score =  176 bits (445), Expect = 1e-48
 Identities = 120/334 (35%), Positives = 173/334 (51%), Gaps = 8/334 (2%)

Query: 3   TMKDVAQLAGVSTATVSRALMNPEK---VSSSTRKRVEEAVLEAGYSPNSLARNLRRNES 59
           T++DVA+ AGV  +TVSRAL +PEK   +S    + VEEA    GY PN  A  LR   +
Sbjct: 14  TIRDVARAAGVHVSTVSRAL-SPEKRSLISEEVLRVVEEAAQRLGYRPNRAASALRTGRT 72

Query: 60  KTIVAIVPDICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGM 119
            TI  +VPDI +  F  I++GIE +A   GY V + +           +  +  ++ DG+
Sbjct: 73  HTIGVLVPDITNAVFPPILQGIEASAAARGYFVFVTNVADPALAR-PVLERMLAQRVDGV 131

Query: 120 LLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDNLTSAFEAVNYLTQLGHKRI 179
           ++        +     K     V+         LP V  D+  +   AV++L  LGHKRI
Sbjct: 132 VMATATRDDPLVDFVAKAGMTAVLVNRADETGRLPAVVSDDRLAMKLAVDHLVALGHKRI 191

Query: 180 AQISGPQHAALCQFRHQGYQQALRRAGITMNP-TYCTFGDFTFEAGAKAVRQLLALPEQP 238
           A ++GPQ       R  G +QALR     M P        ++ EAGA A++Q+L     P
Sbjct: 192 AHLAGPQTIPTGVGRRLGVEQALRDH--RMKPFRVVECASYSREAGALAMKQMLEAGAAP 249

Query: 239 TAIFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQ 298
            A+ C ND +A+GA    +  GLRVPQD+SV G +D+      DPPLTTI  P  E+G +
Sbjct: 250 QAVVCCNDLVALGAYDALREAGLRVPQDISVTGHNDMPLVDMVDPPLTTIRLPHRELGWR 309

Query: 299 AMLMMLELLRGHDVRAGSRLLETKLVVRESAAPP 332
           A  M+ + + G  + A + +L  +LVVR+S A P
Sbjct: 310 AAEMLFDEIDGRSMSASTVVLRPELVVRQSTAAP 343