Pairwise Alignments

Query, 335 a.a., DNA-binding transcriptional regulator CytR from Vibrio cholerae E7946 ATCC 55056

Subject, 340 a.a., DNA-binding transcriptional repressor from Pseudomonas putida KT2440

 Score =  206 bits (524), Expect = 7e-58
 Identities = 115/332 (34%), Positives = 186/332 (56%), Gaps = 2/332 (0%)

Query: 1   MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESK 60
           MAT+KDVA LAG+S  TVS  L     VS   R +VE A++E  Y P+++AR+L+   + 
Sbjct: 1   MATIKDVAALAGISYTTVSHVLNKTRPVSEQVRLKVEAAIIELDYVPSAVARSLKARSTA 60

Query: 61  TIVAIVPDICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGML 120
           TI  +VP+  +PYF+E+ RGIEDA   +GY V+L +S    +++ S++ ++  K+ DG++
Sbjct: 61  TIGLLVPNSVNPYFAELARGIEDACERNGYCVILCNSDDNPQKQRSYLRVLLEKRIDGLV 120

Query: 121 LLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDNLTSAFEAVNYLTQLGHKRIA 180
           +       D+ +       PMV+       ++   V ID+   A+ A  +L +LGH+ +A
Sbjct: 121 VASVGQDDDLLQSLASVRTPMVIVDRELEGVDADLVRIDHEQGAYLATRHLLELGHRDVA 180

Query: 181 QISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA 240
            I GP    + Q R  G+++A+  AG  +  +     DFT   G  A  Q+L   ++P+A
Sbjct: 181 YIGGPAETGVTQLRLSGFRRAMAEAGAPVPGSRVLHCDFTSPGGHAAAAQVLE-GKRPSA 239

Query: 241 IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQ-A 299
           IF  ND +  G ++ A    + VP +LSV+GFDDI+ ++Y  P LTT+ Q   E+G   A
Sbjct: 240 IFAGNDMIGFGVLRAAAERNISVPGELSVIGFDDIELSRYVYPSLTTVGQSIRELGESAA 299

Query: 300 MLMMLELLRGHDVRAGSRLLETKLVVRESAAP 331
            L++  +       A  R++  ++V+RES  P
Sbjct: 300 SLLLTRIATPRQGAAEQRIVAPRIVLRESTGP 331