Pairwise Alignments

Query, 335 a.a., DNA-binding transcriptional regulator CytR from Vibrio cholerae E7946 ATCC 55056

Subject, 340 a.a., LacI family DNA-binding transcriptional regulator from Pseudomonas sp. SVBP6

 Score =  212 bits (540), Expect = 9e-60
 Identities = 126/335 (37%), Positives = 184/335 (54%), Gaps = 8/335 (2%)

Query: 1   MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESK 60
           MAT+KDVA LAG+S  TVS  L     VS   R +VE A+ E  Y P+++AR+L+   + 
Sbjct: 1   MATIKDVAALAGISYTTVSHVLNKTRPVSEPVRLKVEAAIAELDYVPSAVARSLKARSTA 60

Query: 61  TIVAIVPDICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGML 120
           TI  +VP+  +PYF+E+ RGIED    +GY V+L +S    +++ S++ ++  K+ DG++
Sbjct: 61  TIGLLVPNSVNPYFAELARGIEDGCERNGYCVILCNSDDNPQKQRSYLRVLLEKRIDGLI 120

Query: 121 LLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDNLTSAFEAVNYLTQLGHKRIA 180
           +       D+         PMV+       +    V ID+   A+ A  +L  LGH+ IA
Sbjct: 121 VASVGEDRDLLDSLASVRTPMVIVDRALEGVAADLVRIDHEQGAYLATRHLLDLGHRDIA 180

Query: 181 QISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA 240
            I GP   ++ Q R  G+ +AL  AG+T    +    DFT   G  A   LL   E+PTA
Sbjct: 181 CIGGPASTSVAQLRLAGFHRALAEAGVTPRQDWLLSSDFT-SLGGYAAAALLLEGERPTA 239

Query: 241 IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAM 300
           IF  ND + IG ++ A    + VP +LSV+GFDDIQ +QY  P LTT+ Q   E+G  A 
Sbjct: 240 IFAGNDMIGIGVLRAAAERNICVPSELSVIGFDDIQISQYVFPALTTVGQSIRELGENAA 299

Query: 301 LMML----ELLRGHDVRAGSRLLETKLVVRESAAP 331
            ++L    E LRG       R++   +V+RES AP
Sbjct: 300 ELLLRRIAEPLRG---APEQRIVAPSIVLRESTAP 331