Pairwise Alignments

Query, 335 a.a., DNA-binding transcriptional regulator CytR from Vibrio cholerae E7946 ATCC 55056

Subject, 326 a.a., LacI family DNA-binding transcriptional regulator from Pantoea agglomerans CFBP13505 P0401

 Score =  198 bits (503), Expect = 2e-55
 Identities = 121/331 (36%), Positives = 187/331 (56%), Gaps = 10/331 (3%)

Query: 3   TMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTI 62
           +++ +A++AGVS ATVSR L N + V  + R++V EA+ E+ Y PN LAR LR   S  I
Sbjct: 2   SIQKIARMAGVSVATVSRVLNNSDSVKPANRQKVLEAIEESNYQPNLLARQLRTARSSMI 61

Query: 63  VAIVPDICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLL 122
           + +V DI +P+ +E+++GIE+ A ++GY +LL +SG    R  S + L+  K  DG++ +
Sbjct: 62  LVLVSDISNPFCAEVVKGIEEQAEKNGYRILLCNSGADIARSRSSLQLLSGKMVDGIITM 121

Query: 123 GTDLPFDVSK-PEQKNL---PPMVMACEFAPELELPTVHIDNLTSAFEAVNYLTQLGHKR 178
                   SK PE   L    P V   E     ++  V ID+  +A   V+YL   G +R
Sbjct: 122 DA-----FSKLPELSQLIGTAPWVQCAEHDDNGQISCVGIDDDVAAQSVVHYLAGQGRQR 176

Query: 179 IAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQP 238
           IA I+        + R QGY   L+   +          + +F AG  A+ QLLA   +P
Sbjct: 177 IALINHDLRYRYARLRQQGYAHQLKEHQLAWQ-DIAYASELSFSAGKAAMNQLLAGETRP 235

Query: 239 TAIFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQ 298
            A+F  +DT+A GA+   ++ GLR+PQD++VVGFD  + A    PPLTT++QP  EIGR+
Sbjct: 236 DAVFAVSDTLAAGAMAAIQQAGLRIPQDIAVVGFDGSELADMVSPPLTTLAQPSREIGRR 295

Query: 299 AMLMMLELLRGHDVRAGSRLLETKLVVRESA 329
           A  ++L+ +   D      +++ +LVVR S+
Sbjct: 296 ACELVLQKIIRPDSPPQCVIMQGELVVRASS 326