Pairwise Alignments

Query, 335 a.a., DNA-binding transcriptional regulator CytR from Vibrio cholerae E7946 ATCC 55056

Subject, 329 a.a., Ribose operon repressor from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  207 bits (528), Expect = 2e-58
 Identities = 119/328 (36%), Positives = 192/328 (58%), Gaps = 3/328 (0%)

Query: 4   MKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIV 63
           MKDVA+LAGVST+TVS  +     VS +  ++VE A+    Y+P++LAR+L+ N+++TI 
Sbjct: 1   MKDVARLAGVSTSTVSHVINKDRFVSETITEKVEAAIKSLNYAPSALARSLKLNQTRTIG 60

Query: 64  AIVPDICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLG 123
            ++    +P++SE++RG+E +  E GY ++L ++   ++R N  +  +  K+ DG+LLL 
Sbjct: 61  MLITASTNPFYSELVRGVERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLC 120

Query: 124 TDL--PFDVSKPEQKNLPPMVMACE-FAPELELPTVHIDNLTSAFEAVNYLTQLGHKRIA 180
           T+   P         ++P ++M    F  E +   +  ++L     A  YL   G  RIA
Sbjct: 121 TETHQPSREIMERYPSIPTVMMDWSPFDGEGDSDLIQDNSLLGGDLATQYLIDKGFTRIA 180

Query: 181 QISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA 240
            I+GP      + R +GY+ A++RAG+ +   Y   GDF F  G  A++ LLA  ++P A
Sbjct: 181 CITGPLDKTPARLRLEGYRAAMKRAGLAIPQGYEITGDFEFGGGFDAMQALLAHQQRPQA 240

Query: 241 IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAM 300
           +F  ND MA+GA Q   + GLR+PQD+ V+G+DDI+ A+Y  PPLTTI QP+ E+G  A+
Sbjct: 241 VFTGNDAMAVGAYQALYQAGLRIPQDMVVIGYDDIELARYMTPPLTTIHQPKDELGELAI 300

Query: 301 LMMLELLRGHDVRAGSRLLETKLVVRES 328
            +++  +    ++     L   L VR S
Sbjct: 301 DVLIHRMAQPALQQQRLQLTPVLTVRGS 328