Pairwise Alignments

Query, 335 a.a., DNA-binding transcriptional regulator CytR from Vibrio cholerae E7946 ATCC 55056

Subject, 357 a.a., LacI family DNA-binding transcriptional regulator from Dickeya dianthicola ME23

 Score =  169 bits (428), Expect = 1e-46
 Identities = 115/336 (34%), Positives = 181/336 (53%), Gaps = 18/336 (5%)

Query: 3   TMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTI 62
           T+ DVA  AGVS  TVSR L     VS  TR +VE+A+    Y PN +A+ L R+ + T+
Sbjct: 7   TLNDVAAYAGVSYQTVSRVLNQAPHVSHRTRGKVEQAMAALHYIPNRVAQQLARHSATTL 66

Query: 63  VAIVPDICDPYFSEIIRGIEDAAMEHGYLVLLG-----DSGQQKRRENSFVNLVFTKQAD 117
                D+     S+I   I+  A E G+ V++      D    +R     VN +  ++ D
Sbjct: 67  GLATIDLSLHAPSQIAAAIKTTASELGFNVVISMLRAADGNDVQRA----VNELLAQRVD 122

Query: 118 GMLLLGTDLPFDVSKPEQKNL---PPMVMACEFAPELELPTVHIDNLTSAFEAVNYLTQL 174
           G+++   ++P +    EQ +        +  + +P  +LP+V  D    A  A+++L  L
Sbjct: 123 GVIV---NVPLEQEAAEQIHQLCGATPALFLDTSPTADLPSVIFDPHQGAKLAIDHLVTL 179

Query: 175 GHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLAL 234
           GH+RIA ++GPQ +   + R++G+QQAL  A   + P     GD++  AG +    LLA 
Sbjct: 180 GHRRIALLAGPQSSVSARLRYEGWQQAL--AAHLLTPCATAEGDWSASAGYQQAHLLLAN 237

Query: 235 PEQPTAIFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYE 294
             +PTAI   ND MA+G ++     GLRVP+ +SV+GFDD + + Y  PPLTTI Q   +
Sbjct: 238 SLRPTAIAVANDQMALGVLRAIHEYGLRVPEQISVIGFDDTRDSAYFQPPLTTIRQDFRQ 297

Query: 295 IGRQAMLMMLELLRGHDVRAGSRLLETKLVVRESAA 330
           +GR+++  +LE L+ H        L+T L+ R++ A
Sbjct: 298 LGRESVNRLLECLQ-HPHPPAPLRLKTTLIPRQTTA 332