Pairwise Alignments

Query, 335 a.a., DNA-binding transcriptional regulator CytR from Vibrio cholerae E7946 ATCC 55056

Subject, 357 a.a., LacI-family transcriptional regulator from Caulobacter crescentus NA1000 Δfur

 Score =  176 bits (447), Expect = 6e-49
 Identities = 123/339 (36%), Positives = 177/339 (52%), Gaps = 18/339 (5%)

Query: 2   ATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKT 61
           AT+ D+A+LAGVS  TVSR +     V   TR+R+E  + E GY+P+  AR L    S  
Sbjct: 25  ATINDIARLAGVSKKTVSRVINQSPFVRDETRERIEAVIAEWGYAPDPQARGLAFRRSFL 84

Query: 62  IVAIVPDICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLL 121
           I  I  +    Y   +  G+ D     G+ +++    +      + +     +Q     L
Sbjct: 85  IGMIYDNPNPQYVVNMQLGLLDGMRGSGFELVVHPCNRASPTFLTDIRAFVERQK----L 140

Query: 122 LGTDLPFDVSKPEQKNLPPMVMACEF----APELELPTVHI---DNLTSAFEAVNYLTQL 174
            G  LP  VS+ E+       + C +    + EL+ P   I   D +  A +A  ++ +L
Sbjct: 141 FGVVLPPSVSEDERVAKLLNEIGCAYIRIASVELDKPEHMIVGQDRMGGA-QAARHIVEL 199

Query: 175 GHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLAL 234
           GHKRIA ISGP+       R  G++  L  AG++++P     G +TFE+G     +LL+ 
Sbjct: 200 GHKRIAFISGPETFRSSHERRGGFEDGLAEAGLSLSPNDIVQGAYTFESGVACGDELLSR 259

Query: 235 PEQPTAIFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYE 294
             +PTAIFC ND MA G +Q A++ GL VPQDL+VVGFDD Q AQ   PPLTTI  P  E
Sbjct: 260 SPRPTAIFCGNDEMAAGVLQSARKAGLSVPQDLTVVGFDDFQIAQAVWPPLTTIHTPTRE 319

Query: 295 IGRQAMLMMLELLRGHDVRAGSRL--LETKLVVRESAAP 331
           IGR A    +E L G + R    +  +E  LV+R+S+ P
Sbjct: 320 IGRIA----VEKLIGDERREPRDVTKMEPNLVIRQSSGP 354