Pairwise Alignments

Query, 335 a.a., DNA-binding transcriptional regulator CytR from Vibrio cholerae E7946 ATCC 55056

Subject, 330 a.a., transcriptional repressor of ribose metabolism from Escherichia coli BL21

 Score =  210 bits (534), Expect = 5e-59
 Identities = 120/330 (36%), Positives = 194/330 (58%), Gaps = 1/330 (0%)

Query: 1   MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESK 60
           MATMKDVA+LAGVST+TVS  +     VS +   +VE A+ E  Y+P++LAR+L+ N++ 
Sbjct: 1   MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTH 60

Query: 61  TIVAIVPDICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGML 120
           TI  ++    +P++SE++RG+E +  E G  ++L ++   ++R N  +  +  K+ DG+L
Sbjct: 61  TIGMLITASTNPFYSELVRGVERSCFERGDSLVLCNTEGDEQRMNRNLETLMQKRVDGLL 120

Query: 121 LLGTDLPFDVSKPEQKNLPPMVMACEFAP-ELELPTVHIDNLTSAFEAVNYLTQLGHKRI 179
           LL T+      +  Q+      +  ++AP + +   +  ++L     A  YL   GH RI
Sbjct: 121 LLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDNSLLGGDLATQYLIDKGHTRI 180

Query: 180 AQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPT 239
           A I+GP      + R +GY+ A++RAG+ +   Y   GDF F  G  A+RQLL+ P +P 
Sbjct: 181 ACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ 240

Query: 240 AIFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQA 299
           A+F  ND MA+G  Q   +  L+VPQD++V+G+DDI+ A +  PPLTTI QP+ E+G  A
Sbjct: 241 AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELA 300

Query: 300 MLMMLELLRGHDVRAGSRLLETKLVVRESA 329
           + +++  +    ++     L   L+ R SA
Sbjct: 301 IDVLIHRITQPTLQQQRLQLTPILMERGSA 330