Pairwise Alignments

Query, 335 a.a., DNA-binding transcriptional regulator CytR from Vibrio cholerae E7946 ATCC 55056

Subject, 340 a.a., LacI family transcriptional regulator from Agrobacterium fabrum C58

 Score =  176 bits (446), Expect = 8e-49
 Identities = 102/331 (30%), Positives = 178/331 (53%), Gaps = 5/331 (1%)

Query: 4   MKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIV 63
           +  +A+  G+STAT+S AL +   V+S TR +++E     GY  N  A +LR + S  + 
Sbjct: 7   LSTIAESLGLSTATISLALRDSPLVASDTRDKIKEQARALGYIYNRRAASLRTSRSGIVG 66

Query: 64  AIVPDICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLL-- 121
            +  D+ +P++ EI++ IE          +L +      ++ +F+  +    +DG+++  
Sbjct: 67  VVFHDVMNPFYGEILKAIESELDRSRQTFILSNHYDSVEKQRTFIETLLQLGSDGIIMSP 126

Query: 122 -LGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDNLTSAFEAVNYLTQLGHKRIA 180
            +GT +  D++  E+  +P +++A      +++PT   D+      A N+L  LGH+ IA
Sbjct: 127 AIGTPIE-DMTLAEENGMPAILVARSM-DGVDMPTYRGDDSYGISLATNHLISLGHRTIA 184

Query: 181 QISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA 240
            + G    +  + R+QGY  ALR+AGI ++P     G  + + G +A    L+LP++PTA
Sbjct: 185 MVGGTDQTSTGRDRYQGYVNALRKAGIEVDPNLRIPGPRSKQGGFEAAVHFLSLPQKPTA 244

Query: 241 IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAM 300
             C ND +AIG +    R GL    D+SV G+DD++ A    P LTT+S  + E+GR A 
Sbjct: 245 AVCWNDLVAIGLMNGISRAGLVPGVDISVTGYDDLEEAAIATPALTTVSNGQAEVGRLAA 304

Query: 301 LMMLELLRGHDVRAGSRLLETKLVVRESAAP 331
             +L+ L G     G  L++ ++ +R+S  P
Sbjct: 305 RALLDRLAGSHEPDGIHLIKPEMRIRQSTGP 335