Pairwise Alignments

Query, 335 a.a., DNA-binding transcriptional regulator CytR from Vibrio cholerae E7946 ATCC 55056

Subject, 342 a.a., LacI family transcriptional regulator from Agrobacterium fabrum C58

 Score =  182 bits (461), Expect = 1e-50
 Identities = 117/337 (34%), Positives = 176/337 (52%), Gaps = 6/337 (1%)

Query: 3   TMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTI 62
           ++KDVAQ AGVS ATVSR L    ++ S T+ R+E A+ E  Y PN  AR L R  S TI
Sbjct: 8   SLKDVAQAAGVSVATVSRLLNGTLELPSETKTRIETAIRELNYVPNPHARRLSRGRSDTI 67

Query: 63  VAIVPDICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLL 122
             +VPDI +P+F  ++  +E+ A   G  + L  +  +K RE S++ L+     DG++ +
Sbjct: 68  GLVVPDIGNPFFGMLVAAVEEEADRRGLALSLFATLNRKGRELSYLRLLARNHVDGLVFI 127

Query: 123 GTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDNLTSAFEAVNYLTQLGHKRIAQI 182
                 D           +V+  E  P   +P +  DN      A  +L + GH R+  +
Sbjct: 128 TNHPNTDELAELINTTGKVVVVDEDVPGATVPKLFCDNEQGGRLAGAHLAEHGHSRVLYV 187

Query: 183 SGPQHAALCQFRHQGYQQAL--RRAGITMNPT-YCTFGDFTFEAGAKAVRQLLALPEQPT 239
            GP+     + R +G   AL  R+    ++ T YC  G +T E G  A R+ L      T
Sbjct: 188 GGPEDMISTERRFRGMTSALAERKCEAELSITRYC--GAYTVEFGRAAARRFLDEGRPAT 245

Query: 240 AIFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQA 299
           A+F  +D +AIG ++  +  G+R+PQD+S++GFDD+       PPLT I QP   IG++A
Sbjct: 246 AVFASSDEIAIGFVEVLRSEGVRIPQDVSMIGFDDVGPLHLFAPPLTAIRQPVSAIGQRA 305

Query: 300 MLMMLELLRGHDV-RAGSRLLETKLVVRESAAPPSKK 335
           + ++LE             LL  ++VVRES APP+ K
Sbjct: 306 LSLLLETNWDEGAPPLSEELLPVEIVVRESVAPPAIK 342