Pairwise Alignments

Query, 460 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 451 a.a., multidrug transporter MATE from Pseudomonas simiae WCS417

 Score =  127 bits (318), Expect = 1e-33
 Identities = 105/391 (26%), Positives = 181/391 (46%), Gaps = 17/391 (4%)

Query: 55  LLGTQALAAISYTFPVTFAVNCITMGIGVGLSTCIGRLLGQGDGRQAARVSSHGLLLALL 114
           +LGTQALAA+S  FP+ F    + +G+G G S  IG+  G  +      ++   L L  L
Sbjct: 41  MLGTQALAAVSGMFPIVFFFIALVIGLGAGASVLIGQAWGAQETAMVKAITGATLTLGAL 100

Query: 115 LVAAASTLGLLTIEPLFLLLGASHELIPLIKEYMVVWYLTIPLLVLPMAGNSAIRATGDT 174
           +   A+ LG L   P    LG   +++     Y     L +PLL++ +     +R   DT
Sbjct: 101 VGVVAAVLGSLFARPALQALGTPVDVLDDAVGYAQKMMLIMPLLLVFILYTQLLRGVSDT 160

Query: 175 KTPAKIMMLAGLINGALDPLLIFGYGPFPELGIQGAAIASAFSWLGALIGSLYLL--IKR 232
            +P   +M++ L+   L P LI G+   P +GIQ A  A     +G  +  L+L+  ++ 
Sbjct: 161 ISPLLALMVSTLVGLLLTPALIRGWVGLPPMGIQSAVYAGL---VGNALAMLFLILRLRH 217

Query: 233 EKLLAIPS---LPHLRDD---WQQILKIGTPAALSTAMNPISGALLMIMLSSHGTAAVAA 286
           +  +  P    L  LR D     ++L+IG P  L   +  +S  +++ +++ HG+ A AA
Sbjct: 218 KNHVMAPDRELLAALRLDRVILGKVLRIGLPTGLQMVVLSLSELVILALVNGHGSQATAA 277

Query: 287 YGATQRIESILILVLMSLTSALTPFMAQNLGAQNPARSFAGLFLSLRFSLLFQLMVFIMM 346
           YGA  +I + +    +S+    +   AQ +GA    R    L   L  +      + ++ 
Sbjct: 278 YGAVTQIVNYVQFPALSIAITASILGAQAIGAGRLERIGPILRTGLLINTCLTGGLIVLG 337

Query: 347 VPLSIPLAALFSQEQAVR---DLLWHYLLVVPVSYGFQGVVMMLVSALNALHQPLKAFQW 403
             LS  L  LF  + A R   + L H +L   + +GFQ V+  ++ A   +  P+     
Sbjct: 338 YVLSHWLLGLFITDDAARVNAEHLLHIMLWSILVFGFQAVIGGIMRASGVVLMPVVI--- 394

Query: 404 SFMRLFVFTLPAAWIGGRLYNIEGLFIGIAV 434
           S   +    LP A++    + +EG+++   V
Sbjct: 395 SIFCVLCVELPMAYLLNAHFGLEGVWMAFPV 425