Pairwise Alignments

Query, 460 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 464 a.a., multidrug transporter from Pseudomonas simiae WCS417

 Score = 73.6 bits (179), Expect = 1e-17
 Identities = 93/419 (22%), Positives = 177/419 (42%), Gaps = 30/419 (7%)

Query: 28  LRQMTVPMIFGLVAILMFNLVDTFFISLLGTQALAAISYTFPVTFAVNCITMGIGVGLST 87
           L  + +P++ G +A    + VD      +  Q LAA+     +   V  +  G  +  + 
Sbjct: 21  LLTLALPIMIGQLATTAMSFVDAVMAGRVSPQDLAAVGLGNSIWIPVYLLMTGTLLATTP 80

Query: 88  CIGRLLGQGDGRQAARVSSHGLLLALLLVAAASTLGLLTIEPLFLLLGASHELIPLIKEY 147
            + +  G G   +   +    L LA+++   AS L LL  EP+  ++    +LI     Y
Sbjct: 81  KVAQRYGAGQFSEIGPLVRQSLWLAVVVGITASLL-LLCAEPILHVMNVEPDLIEPSMGY 139

Query: 148 MVVWYLTIPLLVLPMAGNSAIRATGDTKTPAKIMMLAGL-INGALDPLLIFGYGPFPELG 206
           +      +P + L           G T+ P+ +M L GL +N  L+ + I+G+   P +G
Sbjct: 140 LHGIAAGMPAIALYYVLRCFSDGLGRTR-PSMVMGLCGLALNIPLNYIFIYGHLGVPAMG 198

Query: 207 IQGAAIASAFSWLGALIGSLYLLIKREKLLAIPSLPHLRDDWQQ------ILKIGTPAAL 260
             G   A+A +    ++G    +  R       S  + R DW Q      +L IG P  +
Sbjct: 199 GVGCGWATAIAMWVMMLG--LAVWTRWGPAYQSSELYKRFDWPQWAVIKRVLSIGLPIGI 256

Query: 261 STAMNPISGALLMIMLSSHGTAAVAAYGATQRIESILILVLMSLTSALTPFMAQNLGAQN 320
           +        A++ +++ S G   V+ +     + S++ ++  SL+ A+T  + Q LG   
Sbjct: 257 AIFAESSIFAVIALLIGSLGATVVSGHQIALNVSSLVFMIPYSLSMAVTVRVGQALGRGE 316

Query: 321 PARSFAGLFLSLRFSLLFQLMVFIMMVPLSIPLAALFSQEQAVRDLLWHYLLVVPVSYGF 380
           P  +     + +  +L +  +   +M+     +AA+++ +  V  L     +++  S  F
Sbjct: 317 PREARFAAGVGMGTALAYACLSCSLMLLFREQIAAIYTPDPVVIHLA---SMLIVFSALF 373

Query: 381 QGVVMMLVSALNALHQPLKAFQWSFMRLFVFTLPAAWIGGRLYNIEGLFIGIAVGNILG 439
           Q    + V+A  A    L+ +Q + + + V TL A W            +G+ VG  LG
Sbjct: 374 QFSDSIQVTAAGA----LRGYQDTRVTM-VLTLFAYW-----------GVGLPVGYALG 416



 Score = 34.7 bits (78), Expect = 7e-06
 Identities = 35/166 (21%), Positives = 68/166 (40%), Gaps = 9/166 (5%)

Query: 19  LLSAPIPLVLRQMTVPMIFGLVAILMFNLVDTFFISLLGTQALAAISYTFPVTFAVNCIT 78
           +LS  +P+ +       IF ++A+L         I  LG   ++       V+  V  I 
Sbjct: 247 VLSIGLPIGIAIFAESSIFAVIALL---------IGSLGATVVSGHQIALNVSSLVFMIP 297

Query: 79  MGIGVGLSTCIGRLLGQGDGRQAARVSSHGLLLALLLVAAASTLGLLTIEPLFLLLGASH 138
             + + ++  +G+ LG+G+ R+A   +  G+  AL     + +L LL  E +  +     
Sbjct: 298 YSLSMAVTVRVGQALGRGEPREARFAAGVGMGTALAYACLSCSLMLLFREQIAAIYTPDP 357

Query: 139 ELIPLIKEYMVVWYLTIPLLVLPMAGNSAIRATGDTKTPAKIMMLA 184
            +I L    +V   L      + +    A+R   DT+    + + A
Sbjct: 358 VVIHLASMLIVFSALFQFSDSIQVTAAGALRGYQDTRVTMVLTLFA 403