Pairwise Alignments

Query, 297 a.a., DNA-binding transcriptional regulator OxyR from Vibrio cholerae E7946 ATCC 55056

Subject, 296 a.a., DNA-binding transcriptional activator of 3-phenylpropionic acid catabolism (NCBI) from Escherichia coli BW25113

 Score =  108 bits (271), Expect = 1e-28
 Identities = 80/295 (27%), Positives = 138/295 (46%), Gaps = 6/295 (2%)

Query: 1   MNIRDFEYLVALADHKHFRKAAEACFVSQPTLSGQIRKLEDEIGTTLLERSSRRVLFTEA 60
           M +R   Y VA+A   +F +AAE    SQP+LS QIR LE+ +G  LL R  R+V  T A
Sbjct: 1   MELRHLRYFVAVAQALNFTRAAEKLHTSQPSLSSQIRDLENCVGVPLLVRDKRKVALTAA 60

Query: 61  GLQLVDQAKKILSEVKTFKDMANQQTGAMTGPLHIGFIPTLGPYLLPKIIPTLKERFPEL 120
           G   +  A  IL + +  K +  ++       L IGF+P+    LLPK++P  + R P+ 
Sbjct: 61  GECFLQDALAILEQAENAK-LRARKIVQEDRQLTIGFVPSAEVNLLPKVLPMFRLRQPDT 119

Query: 121 ELYLHEAQTNQLVRQLEEGKLDCLVLASVEETAPFKEIELYNEVLSIAVPCDHAWAARDE 180
            + L    T Q   ++  G+LD  ++     +     +EL++E L + +P DH  A   E
Sbjct: 120 LIELVSLITTQQEEKIRRGELDVGLMRHPVYSPEIDYLELFDEPLVVVLPVDHPLAHEKE 179

Query: 181 VDMLELKGKTVLALGDGH--CLRDQALGFCFAAGAKDDERFKATSLETLRNMVAAGAGIT 238
           +   +L G   ++    +   L      +     ++ +    AT++    N+V  G G+T
Sbjct: 180 ITAAQLDGVNFVSTDPVYSGSLAPIVKAWFAQENSQPNIVQVATNILVTMNLVGMGLGVT 239

Query: 239 LLPELALPEDKTKDGVCYLRAVNPIPSRRLVLAYRPGSPLRQRFEQLAEVIKHRL 293
           L+P      +     V +      +PS  L++A++ G  ++        +++ RL
Sbjct: 240 LIP--GYMNNFNTGQVVFRPIAGNVPSIALLMAWKKGE-MKPALRDFIAIVQERL 291