Pairwise Alignments

Query, 835 a.a., penicillin-binding protein 1A from Vibrio cholerae E7946 ATCC 55056

Subject, 782 a.a., penicillin-binding protein 1B from Rhodanobacter sp000427505 FW510-R12

 Score =  155 bits (393), Expect = 6e-42
 Identities = 98/287 (34%), Positives = 153/287 (53%), Gaps = 9/287 (3%)

Query: 46  VATLRDVQLQTPMQVFSQDGKLIAQF----GEKRRIPLKLEEMPKELIEAVIATEDSRYY 101
           V +++D     P+++   D   IA       E+RR  ++L ++P  L+  + A ED  + 
Sbjct: 133 VQSVQDAASGKPIELAHLDPARIATLYGASQEERRF-VRLADVPPLLVSGLQAVEDRDFN 191

Query: 102 EHYGFDPIGITRAAFAVLASGSASQGASTITQQLARNFFLSNEKKVMRKVKEIFIAIHIE 161
            H G D   I RAAFA L +G   QG ST+TQQL RN FLS E+   RK+ E  +A+ +E
Sbjct: 192 HHIGIDVSAIARAAFANLRAGHTVQGGSTLTQQLVRNLFLSREQNFTRKINEALMALLLE 251

Query: 162 QLLSKQEILELYLNKIYLGYRS----YGVGAAAQAYFGKEVKDLTLGEIALIAGLPKAPS 217
              SK  ILE Y+N ++LG +     +G  AA++ YFG+ ++DL   EIAL+ G+ K PS
Sbjct: 252 AHYSKGRILEAYVNDVFLGQQGGQAVHGFAAASEFYFGRRLEDLRPQEIALLVGMVKGPS 311

Query: 218 TMNPIYSVERATNRRNVVLQRMLDEKYITKAEYDAARAEPVLPKYHGAEIELNAPYVAEI 277
             +P  S +RA  RRN+VLQ   D   I   + + A+A P+    +G       P   ++
Sbjct: 312 YYDPRRSPQRALARRNLVLQEFFDTNLIGAGQLNTAQAAPLDIVKNGQLPHNRFPAFMDL 371

Query: 278 ARAWMVERYGEEAAYTSGMNVYTTVDSKLQRAANQAAINNLLAYDER 324
            R  +   + E+A     ++++TT+D   Q  A +A  ++L    +R
Sbjct: 372 VRKQITADFDEQALREGKLSIFTTLDPAAQLYAERAITDSLKGLGKR 418



 Score = 94.7 bits (234), Expect = 2e-23
 Identities = 72/288 (25%), Positives = 128/288 (44%), Gaps = 37/288 (12%)

Query: 444 AFVAMNPENGAVTALVGGFNFVHNKFNRATQSVRQVGSSIKPFIYSAALN--KGLTLATL 501
           A V  + + G+V A+VG        FNRA  + R +GS+IKPF+Y  AL   +   LA+L
Sbjct: 425 AAVVTSAQTGSVLAVVGSRTPGEQGFNRALDARRPIGSTIKPFVYLVALTQPQRWNLASL 484

Query: 502 INDAPINQWDESQGTAWRPKNSPPTYTGPTRLRIGLAQSKNVMAVRVLREVGLDETREYL 561
           ++D P++   +  G+ W P+N       P  +   LA S N+  + +  +VGL   + +L
Sbjct: 485 MDDGPVSM-RQPDGSYWTPQNDDHRSHDPLIMVDALAHSWNLATIHLGLQVGLPRIQAFL 543

Query: 562 TRFGFKLDQLPRSETIALGAGSLTPVQMAQGFSVFANNGYFVEPFYISRVENPFGNIEFS 621
             FG  +  +  S ++ +GA  L P+Q+ Q +   A +G+ +    +  V +  G     
Sbjct: 544 KSFG--IGDINPSPSLLIGAQDLAPLQLTQLYQYLAADGHALPLVAVRGVLDGNG----- 596

Query: 622 AEPKVVCHRECSSELDEFAEQDAASPYAPKVISEQNAFLTREMLYSNIWGGGEWSSDTGW 681
              + +   +      E+ +    + +A + ++E                          
Sbjct: 597 ---RTIKRYQVQGGPGEYRDAVRLTTWAMQQVAEYG------------------------ 629

Query: 682 NGTGWRAQALKRRDIGGKTGTTNDSKDAWYNGYAPGIVGVAWVGFDDH 729
             +     AL      GKTGT+ND +D+W+ G+    + V W+G DD+
Sbjct: 630 TASALGNSALASLHAAGKTGTSNDMRDSWFAGFTGEHLAVFWMGRDDN 677