Pairwise Alignments

Query, 835 a.a., penicillin-binding protein 1A from Vibrio cholerae E7946 ATCC 55056

Subject, 741 a.a., Biosynthetic peptidoglycan transglycosylase from Xanthobacter sp. DMC5

 Score =  187 bits (474), Expect = 2e-51
 Identities = 111/312 (35%), Positives = 175/312 (56%), Gaps = 10/312 (3%)

Query: 12  KFIKRLLVFSLICIILGVTTIFGFYFYVKSDLPDVATLRDVQLQTPMQVFSQDGKLIAQF 71
           + + RL+ +  I  +  +  + G   Y  S LP + TL   +    + V   DGK IA  
Sbjct: 84  RLVFRLVKWGFILGMWALLALAGVIAYEASKLPPMQTLMIPKRPPTVTVQGADGKTIATR 143

Query: 72  GEKRRIPLKLEEMPKELIEAVIATEDSRYYEHYGFDPIGITRAAFAVLASGSASQGASTI 131
           G+   + + + E+P  L +A +A ED R+Y H+G DP G+ RA    L S    QG ST+
Sbjct: 144 GDMGGVAVPIGELPPYLPKAFVAIEDQRFYSHFGLDPEGLARALVTNLTSRRLRQGGSTL 203

Query: 132 TQQLARNFFLSNEKKVMRKVKEIFIAIHIEQLLSKQEILELYLNKIYLGYRSYGVGAAAQ 191
           TQQLA+N FL+ E+   RK++E+ +A+ +E   SK ++L+LYLN++Y G  +YGV AAAQ
Sbjct: 204 TQQLAKNLFLTQERTASRKMQELVLALWLEHKFSKDQLLDLYLNRVYFGAGAYGVEAAAQ 263

Query: 192 AYFGKEVKDLTLGEIALIAGLPKAPSTMNPIYSVERATNRRNVVLQRMLDEKYITKAEYD 251
            YFGK  + +TL E A++AGL  +PS + P  +++ A  R N+VL  M D+K I+     
Sbjct: 264 RYFGKSARQVTLAEAAMLAGLVNSPSRLAPTRNLKGAQTRANLVLAAMRDQKMISADMAS 323

Query: 252 AARAEPVLPKYHGAEIELNAPYVAEIARAWMVERYGE---EAAYTSGMNVYTTVDSKLQR 308
            A+A P      G  +  ++ YVA+    W++++      +      + V TT+D  LQ+
Sbjct: 324 TAQARPAQLARSG--MPDSSGYVAD----WVMDQLDSVLGDGELPGDVTVRTTIDPALQK 377

Query: 309 AANQAAINNLLA 320
            A +AA+ + LA
Sbjct: 378 -AGEAALEDTLA 388



 Score =  130 bits (326), Expect = 4e-34
 Identities = 100/332 (30%), Positives = 146/332 (43%), Gaps = 57/332 (17%)

Query: 444 AFVAMNPENGAVTALVGGFNFVHNKFNRATQSVRQVGSSIKPFIYSAALNKGLTLATLIN 503
           A V ++P+ G V AL+GG ++  +++NRA  + RQ GS+ KPFIY  A+  GL   ++  
Sbjct: 400 AIVVLDPDGG-VKALIGGRSYADSQYNRAVTARRQPGSAFKPFIYLTAVEHGLNPESVRE 458

Query: 504 DAPINQWDESQGTAWRPKNSPPTYTGPTRLRIGLAQSKNVMAVRVLREVGLDETREYLTR 563
           DAPI      Q   WRP+NS   Y GP  L   LA S N ++VR++ E G     +   R
Sbjct: 459 DAPI------QLKGWRPENSTRDYRGPVTLTTALALSLNTVSVRLVLEFGPKAVVQTAHR 512

Query: 564 FGFKLDQLPRSETIALGAGSLTPVQMAQGFSVFANNGYFVEPFYISRVENPFGNIEFSAE 623
            G     L  + +IALG   ++ +++A  ++ FAN G  V P  I  V  P G       
Sbjct: 513 MGIS-SNLDPNPSIALGTSEVSVLELAGAYTPFANGGLGVMPHVIDSVIGPDG------- 564

Query: 624 PKVVCHRECSSELDEFAEQDAASPYAPKVISEQNAFLTREMLYSNIWGGGEWSSDTGWNG 683
            K +  R  +                 +V++ +   +   M+   +  G    +D     
Sbjct: 565 -KPLYERNVTG--------------MGRVVASEYVAMMNHMMTQTLATGTARRADL---- 605

Query: 684 TGWRAQALKRRDIGGKTGTTNDSKDAWYNGYAPGIVGVAWVGFDDHSRNLGKTAPNRNIE 743
            GW A         GKTGT+ D +DAW+ GY    V   W+G DD S       P +   
Sbjct: 606 PGWEA--------AGKTGTSQDYRDAWFVGYTAKYVTAVWLGNDDSS-------PTKK-- 648

Query: 744 DDVSGAESGGKTALPAWVEFMSLALQDVPVQQ 775
                  SG    +  W   M  A Q VPV +
Sbjct: 649 ------ASGANLPVEIWSRVMKAAHQGVPVAE 674