Pairwise Alignments

Query, 835 a.a., penicillin-binding protein 1A from Vibrio cholerae E7946 ATCC 55056

Subject, 773 a.a., transglycosylase/transpeptidase from Pseudomonas putida KT2440

 Score =  167 bits (424), Expect = 2e-45
 Identities = 88/239 (36%), Positives = 145/239 (60%), Gaps = 4/239 (1%)

Query: 76  RIPLKLEEMPKELIEAVIATEDSRYYEHYGFDPIGITRAAFAVLASGSASQGASTITQQL 135
           RI +K++++PK L+E ++ATED  +Y H+G  P  I RA +   +SGS  QG ST+TQQL
Sbjct: 168 RILIKIDQVPKYLLETLVATEDREFYSHFGVSPKSIVRAMWVNTSSGSMRQGGSTLTQQL 227

Query: 136 ARNFFLSNEKKVMRKVKEIFIAIHIEQLLSKQEILELYLNKIYLGYRS----YGVGAAAQ 191
            +NF+LS+E+ + RK+ E  +A+ +E    K+EILE YLN++++G       +G G A+Q
Sbjct: 228 VKNFYLSSERSLSRKLTEAMMAVLLELHYDKREILEAYLNEVFVGQDGQRAVHGFGLASQ 287

Query: 192 AYFGKEVKDLTLGEIALIAGLPKAPSTMNPIYSVERATNRRNVVLQRMLDEKYITKAEYD 251
            +F + + +L L +IAL+ G+ K PS  NP    ERA  RRN+VL  + ++   ++AE D
Sbjct: 288 FFFSQPLSELKLHQIALLVGMVKGPSYYNPRRHPERALARRNLVLDLVAEQGVASQAEVD 347

Query: 252 AARAEPVLPKYHGAEIELNAPYVAEIARAWMVERYGEEAAYTSGMNVYTTVDSKLQRAA 310
           AA+  P+     G+  + + P   ++ +  + + Y +E     G+ ++T+ D  LQ  A
Sbjct: 348 AAKKMPLGVTKRGSLADSSFPAFLDLVKRQLRQDYRDEDLTEEGLRIFTSFDPILQMKA 406



 Score =  117 bits (294), Expect = 2e-30
 Identities = 102/357 (28%), Positives = 152/357 (42%), Gaps = 58/357 (16%)

Query: 440 NANTAFVAMNPENGAVTALVGGFNFVHNKFNRATQSVRQVGSSIKPFIYSAALNK--GLT 497
           +   A V  NPE G V AL+G        FNRA  +VR +GS +KP +Y  AL +    T
Sbjct: 425 DVEAAMVVTNPETGEVQALIGSRQAGFAGFNRAIDAVRPIGSLVKPSVYLTALEQPSKYT 484

Query: 498 LATLINDAPINQWDESQGTAWRPKNSPPTYTGPTRLRIGLAQSKNVMAVRVLREVGLDET 557
           L + + D P +    + G  WRP+N      G   L  GLA S N+   ++  EVG+   
Sbjct: 485 LTSWVQDEPFSV-KGADGQVWRPQNYDRRPHGTIYLYQGLANSYNLSTAKLGLEVGVPNV 543

Query: 558 REYLTRFGFKLDQLPRSETIALGAGSLTPVQMAQGFSVFANNGYFVEPFYISRVENPFGN 617
            + + R G  +D  P    + LGAG ++P+Q+A  +   AN G+      I  V      
Sbjct: 544 IKTIGRLGVNVD-WPAFPAMLLGAGGMSPMQVATMYQTIANGGFNTPMRGIRSV------ 596

Query: 618 IEFSAEPKVVCHRECSSELDEFAEQDAASPYAPKVISEQNAFLTREMLYSNIWGGGEWSS 677
           +    EP          +   F  Q    P A  ++      + RE              
Sbjct: 597 LTAEGEP---------LKRYPFQIQQTFDPGAIYLVQNAMQRVMRE-------------- 633

Query: 678 DTGWNGTGWRAQALKRRD--IGGKTGTTNDSKDAWYNGYAPGIVGVAWVGFDDHSRNLGK 735
                GTG        R   + GKTGT+NDS+D+W++G++  ++ V W+G DD+    GK
Sbjct: 634 -----GTGRSVYNTLPRSLTLAGKTGTSNDSRDSWFSGFSQDLLAVVWMGRDDN----GK 684

Query: 736 TAPNRNIEDDVSGAESGGKTALPAWVEFMSLALQDVPVQQKAVPNNIARVRIDRDTG 792
           T              +G   AL  W  FM  A   +P+     P+N+ +  ID  +G
Sbjct: 685 T------------PFTGATGALQVWTSFMKKA-DPLPLDMPQ-PDNVVQAWIDPYSG 727