Pairwise Alignments

Query, 835 a.a., penicillin-binding protein 1A from Vibrio cholerae E7946 ATCC 55056

Subject, 757 a.a., penicillin binding protein from Agrobacterium fabrum C58

 Score =  171 bits (434), Expect = 1e-46
 Identities = 105/266 (39%), Positives = 154/266 (57%), Gaps = 8/266 (3%)

Query: 65  GKLIAQFGEKRRIPLKLEEMPKELIEAVIATEDSRYYEHYGFDPIGITRAAFAVLASGSA 124
           G  I   G      + +++MP   I+AV+ATED R+++H+G D IG+ RA      +G  
Sbjct: 132 GNTIGHRGIIHEDSVPIDQMPDHFIKAVLATEDRRFFDHFGIDFIGLARAMSENARAGGV 191

Query: 125 SQGASTITQQLARNFFLSNEKKVMRKVKEIFIAIHIEQLLSKQEILELYLNKIYLGYRSY 184
            QG ST+TQQLA+N FL+NE+ + RK+KE F+A+ +E  +SK+EIL LYL++ Y+G  ++
Sbjct: 192 VQGGSTLTQQLAKNLFLTNERSLERKIKEAFLALWLESNMSKKEILSLYLDRAYMGGGTF 251

Query: 185 GVGAAAQAYFGKEVKDLTLGEIALIAGLPKAPSTMNPIYSVERATNRRNVVLQRMLDEKY 244
           G  AAAQ YFGK + D+TL E A++AGL KAP+   P  ++  A  R N VL  ++    
Sbjct: 252 GAAAAAQFYFGKNLTDVTLSESAILAGLFKAPAKYAPHVNLPAARARANTVLSNLVQSGL 311

Query: 245 ITKAEYDAARAEPVLPKYHGAEIELNAP-YVAEIARAWMVERYGEEAAYTS-GMNVYTTV 302
           +T+ +   AR  P          ++ AP Y  + A    V+R   E  +    + V TT+
Sbjct: 312 MTEGQVIGARRNPATVI---DRADVKAPDYFLDWAFD-EVQRLAAEGKFKDHTVVVRTTI 367

Query: 303 DSKLQRAANQAAINNLLAYDERHGYR 328
           D+ LQ+AA QA    L  Y E  GYR
Sbjct: 368 DTGLQQAAEQAMEMELREYGE--GYR 391



 Score =  110 bits (275), Expect = 3e-28
 Identities = 86/284 (30%), Positives = 130/284 (45%), Gaps = 39/284 (13%)

Query: 446 VAMNPENGAVTALVGGFNFVHNKFNRATQSVRQVGSSIKPFIYSAALNKGLTLATLINDA 505
           + M    G V A+VGG ++  ++FNRAT ++RQ GSS K + YSAA+ KG+   TLI+DA
Sbjct: 397 MVMIENGGGVRAMVGGRDYGESQFNRATAALRQPGSSFKVYTYSAAMEKGMKPDTLISDA 456

Query: 506 PINQWDESQGTAWRPKNSPPTYTGPTRLRIGLAQSKNVMAVRVLREV-GLDETREYLTRF 564
           P+  W       W P+N   +Y G   L++ LA+S N + VR+ ++V G     +     
Sbjct: 457 PVT-W-----RGWSPQNYGRSYAGKVTLQVALAKSYNTVPVRLAKDVLGTQVIVDTAKAM 510

Query: 565 GFKLDQLPRSETIALGAGSLTPVQMAQGFSVFANNGYFVEPFYISRVENPFGNIEFSAEP 624
           G     L   +TI LG   +T +  A  ++VF  +G       I +V +  GN+      
Sbjct: 511 GV-ATPLRSDKTIPLGTSEVTVLDQATAYAVFPADGMQSRRHGIEQVMDYEGNV------ 563

Query: 625 KVVCHRECSSELDEFAEQDAASPYAPKVISEQNAFLTREMLYSNIWGGGEWSSDTGWNGT 684
                      L +F+  +   P A +V+SE+      +ML +               GT
Sbjct: 564 -----------LYDFSHDE---PPAKRVLSEEANSKMNQMLVT-----------IPVMGT 598

Query: 685 GWRAQALKRRDIGGKTGTTNDSKDAWYNGYAPGIVGVAWVGFDD 728
             R         GGKTGT+   +DAWY G+        W G D+
Sbjct: 599 ARRGALDNGIVSGGKTGTSQAYRDAWYVGFTGNYTTAVWFGNDE 642