Pairwise Alignments

Query, 338 a.a., pilus assembly protein PilM from Vibrio cholerae E7946 ATCC 55056

Subject, 359 a.a., Type IV pilus biogenesis protein PilM from Variovorax sp. SCN45

 Score = 84.0 bits (206), Expect = 5e-21
 Identities = 72/304 (23%), Positives = 148/304 (48%), Gaps = 22/304 (7%)

Query: 44  TDNHTLDYQKIVKKLKELKKGLPLFSHKVAIAIPDSAVISKVLQIDSDLEQRELEFAVYQ 103
           TD +   + ++ + ++ + +     +  VA+A+P SAVI+K + +   + ++ELE  V  
Sbjct: 54  TDGNVEKFDEVAEAVRRVIRKSGTRTRNVALALPPSAVITKKIILPGGMSEQELEIQVES 113

Query: 104 AFSHQSPFPVEELSLDFVKVTEKSLARSSTTTFQVYATKKDVVDSRLHAVKKAGFEPVLM 163
             +   PF ++E+SLDF  VT  S+  +      + A++K+ V  R    + AG + +++
Sbjct: 114 EANQYIPFSLDEVSLDFC-VTGPSMTSAGDVEVLIAASRKEKVQDREGLAEAAGLKAMIL 172

Query: 164 DVQVH-SLLHLWQLASRAYRR---PDWMLVDIGYTQSSLCLDFPEKMPFYKDVPLGTRQL 219
           DV+ + S L   +L  +   +       L ++G   +S+ +   +++ + +D   G  QL
Sbjct: 173 DVESYASRLATARLIEQLPGKGVDAVVALFEVGAFTTSMQVLRNQEVLYDRDQAFGGAQL 232

Query: 220 ----------ESEPSAVNSLNHPLLHD----PTQRFIQELVDKIARQIQLFTSVHGTQSL 265
                      +E +     +  L  D      + F++ +  +IAR +Q F +      +
Sbjct: 233 TQLIVRQYGFSAEEAEAKKRSGDLPDDYGSGVLKPFVESIAQEIARALQFFFTSTPHNRV 292

Query: 266 GGLWLSGGGATLSGLEDALYQRLSLPCEVLNPFS--LFKNNVAKRKRPLVDGQRFSTAAG 323
             + L+GG ++L GL +A+ ++ S  C ++NPF    F  N+ + K+   +   + T+ G
Sbjct: 293 DYVLLAGGSSSLPGLTNAVTRQTSFACSLVNPFDGMDFGPNI-REKKVRREAPSYLTSCG 351

Query: 324 LALR 327
           LA+R
Sbjct: 352 LAMR 355