Pairwise Alignments

Query, 199 a.a., fimbrial protein from Vibrio cholerae E7946 ATCC 55056

Subject, 319 a.a., pilus assembly protein from Pseudomonas simiae WCS417

 Score = 57.8 bits (138), Expect = 2e-13
 Identities = 45/192 (23%), Positives = 84/192 (43%), Gaps = 7/192 (3%)

Query: 6   SLQELELDEIS----EWPLLPQLVVILLIMLLIQGAGYWFYLMPKQDEIALLKQEEETVK 61
           SL  L L  ++    +W L  + ++   +  ++   G   YL P ++ +  ++  E  ++
Sbjct: 2   SLPRLNLSALTHNAAKWSLPGKALLGCALAGVVFVVGDLVYLSPSRERLHQVEAREVALQ 61

Query: 62  ATLRIKANKVAVLPQIQAQLDELKERYDFLLRQLPVQKELASMLASVNQLGLDSSLTFTR 121
             +  K    A L     QL  ++ + D  L+ LP + E+  +L  + +L L + L    
Sbjct: 62  QQVAQKTGLAASLAARTQQLQLMQAKVDERLQALPGESEMPGLLEDIARLALANGLVVES 121

Query: 122 IDWGERESQEFLYRLPLNIELTGSYHDIGDFSQAIAKLPRIINFDDVDWQRVSQESSTLH 181
           +   +  S+ F +  P+ + + G+YHD+  F   +  L RI    DV  +R   +   L 
Sbjct: 122 VTPLDALSRSFFHEQPVQVGVAGAYHDLAMFLAGLGGLSRIATVHDVVLRR---DGKRLR 178

Query: 182 FRVRAYTYQFKQ 193
             V A TY   Q
Sbjct: 179 LDVLAKTYWHAQ 190