Pairwise Alignments

Query, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

Subject, 715 a.a., type IV pilus secretin PilQ from Rhodanobacter sp000427505 FW510-R12

 Score =  352 bits (903), Expect = e-101
 Identities = 225/565 (39%), Positives = 324/565 (57%), Gaps = 33/565 (5%)

Query: 40  SATANQLENIDFRVNKEKAAVLIVELASPSAVVDVQKVQEGLSIELLKTDVADDKLYLLD 99
           S+    + NIDFR        ++V  +   A  ++ +  + + + +   ++  +    LD
Sbjct: 151 SSAGPAISNIDFRRGPNGEGRVLVNFSGSGANAEMTRKGDKVLVSIDHANLPANLAQRLD 210

Query: 100 VKDFSTPVESVEVFRKEPS-TQLVVTVDGEFQHD-YTLKGKYLEVVISKLKADEKPKPKS 157
             DF+TPV+S+          ++ +TV G  +   Y    +Y+  V  K     K    +
Sbjct: 211 TLDFATPVQSIVTRAGNGGGARMEITVKGNVETSAYQTADQYVVEVAPKKAEAAKDAKLA 270

Query: 158 VLEKE----GKLISINFQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVL 213
            L +E    GK ++ NFQDIPVR+ LQLIAD +G NLV SDSV G++TLRL  VPW Q L
Sbjct: 271 RLGQEPSYNGKRVTFNFQDIPVRSALQLIADISGLNLVASDSVGGSVTLRLVNVPWDQAL 330

Query: 214 DIILQVKGLDKRVDGNVILIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASD 273
           D+IL+ K LDKR +GNV+ +AP+ EL   E+   +    A++  +L ++ + I++ KA+D
Sbjct: 331 DVILRAKSLDKRRNGNVVWVAPQAELAKYEQDLADAKLKAQDTAELVTDYVPISYGKAAD 390

Query: 274 IAAMI-----------GGEGNV--NMLSERGSISIDERTNSLLIRELPDNIAVIREIIES 320
           IA ++           GG GN     LS RGS+S D RTN+LL+ + PD I  +RE+I  
Sbjct: 391 IAKLLTSGSMQGGGGAGGSGNTQRGFLSPRGSVSFDTRTNTLLLNDTPDKIKQLRELIAV 450

Query: 321 LDIPVKQVQIEARIVTVKEGNLEELGVRWGVMS-TNGSHSVGGSIESNLWQKGLLADDEF 379
           LD PV+QV IE+RIV   +    ELG ++GV    N +     +  +     GL   +  
Sbjct: 451 LDKPVQQVLIESRIVVASDDFTRELGAKFGVNGRINNTEFQNAATATPALTAGLGGGN-- 508

Query: 380 PVDEFLNVNLASTSANASSIAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQ 439
                LNVNL  T A  +   F +A LG+   +DLELSA Q E + E+ISSPR+IT N+Q
Sbjct: 509 VTSGGLNVNLPVTPAAGT---FGLAILGANYAIDLELSAAQTEGRGEVISSPRVITANQQ 565

Query: 440 PAYIEQGTEIPYL-------ESSSSGASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQD 492
            A I QG EI Y+         + SG +TV FK AVL LKVTP IT DNR+ L ++V +D
Sbjct: 566 EAVIRQGQEIGYVTFQNSAGSGAGSGTATVQFKDAVLELKVTPTITADNRVYLMINVKKD 625

Query: 493 R-RGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVL 551
              G     G+G+  +IDT+ I T VLV+NG+TVVLGGI++ +  N++ KVP LGD+P +
Sbjct: 626 ALAGYVDAPGSGKIPTIDTREINTSVLVDNGQTVVLGGIYEINKANTMTKVPGLGDIPGV 685

Query: 552 GALFRRTYEQMGKSELLIFVTPKVV 576
           G LFR+T     K+ELLIFVTP+++
Sbjct: 686 GVLFRKTSRTNTKAELLIFVTPRIL 710