Pairwise Alignments

Query, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

Subject, 776 a.a., type II secretion system secretin GspD from Rhodanobacter sp000427505 FW510-R12

 Score =  107 bits (266), Expect = 2e-27
 Identities = 84/310 (27%), Positives = 141/310 (45%), Gaps = 28/310 (9%)

Query: 279 GGEGNVNMLSERGSISID--ERTNSLLIRELPDNIAVIREIIESLDIPVKQVQIEARIVT 336
           G        S  GS+ I   + +N LL+R  P     I+  I  LD    QVQIE RI+ 
Sbjct: 450 GAASEAQYSSSDGSVRISSVDGSNQLLVRARPSQWEEIKTAISKLDNVPLQVQIETRILE 509

Query: 337 VKEGNLEELGVRW---GVMSTNGSHSVGGSIESNLWQKGLLADDEFPVDEFLNVNLASTS 393
           V      + GV+W   G+  + GS S G  +    ++   L              L    
Sbjct: 510 VNLTGEFQFGVQWYLEGLTGSTGSTSNGTFVPGQPYRHRQL-------------GLGQGG 556

Query: 394 ANASSIAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLE 453
                  F  + L S   L + + A++     + +S+P ++  N Q A I  G +IP  +
Sbjct: 557 NAFGGEPFFYSFLNSD--LQVAVRAMETSGNTKTLSAPSMVVMNNQVASIAVGNQIPINQ 614

Query: 454 SS-------SSGASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAV 506
           +S       ++  S V +    + L V P+I P   + +++S    +  ++V    G   
Sbjct: 615 TSVNTGIGTTTSYSQVNYLSTGVILNVQPRINPGGLVYMNISQEVSQADKSVPLVNGNP- 673

Query: 507 SIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSE 566
           +I  +++ TQV V +G+TV+LGG+ Q +  N+   +P L  +PVLG LF  T     ++E
Sbjct: 674 AISQRKLATQVAVQSGQTVLLGGLIQQAEGNTDTGIPGLNRVPVLGRLFGSTNRSRNRTE 733

Query: 567 LLIFVTPKVV 576
           L++ +TP+V+
Sbjct: 734 LIVLITPRVI 743