Pairwise Alignments

Query, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

Subject, 726 a.a., Type IV pilus biogenesis protein PilQ from Variovorax sp. SCN45

 Score =  360 bits (923), Expect = e-103
 Identities = 217/590 (36%), Positives = 338/590 (57%), Gaps = 45/590 (7%)

Query: 26  GLALCASSMVFSAESATANQL--ENIDFRVNKEKAAVLIVELASPSAVVDVQKVQEGLSI 83
           G AL  S+    AE+   + L   ++DFR+  +    +IV+L +    VDV++  + L +
Sbjct: 136 GAALAVSAATTFAENRNRDTLPLRDVDFRLGSDNTGRVIVDLPNNQVGVDVKQQGKNLVV 195

Query: 84  ELLKTDVADDKLYLLDVKDFSTPVESVEVFRKEPSTQLVVTVDGEFQHD-YTLKGKYLEV 142
           E  K+ + +     LDV DF TPV+ +   +     ++ +   G+++H  Y  + ++  V
Sbjct: 196 EFTKSTLPEGLRRRLDVADFGTPVQMITSQQSGDRVRMTIEAKGDWEHSAYQSENQF--V 253

Query: 143 VISKLKADEKPKPKSVLEKEGKLISINFQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTL 202
           V  + +  +  K        G+ +S+NFQ+I +R++LQ+IAD+  FN+V SDSV G LTL
Sbjct: 254 VEMRARKVDPTKLTQGAGYNGEKLSLNFQNIEIRSLLQVIADFTNFNIVTSDSVTGALTL 313

Query: 203 RLDGVPWQQVLDIILQVKGLDKRVDGNVILIAPKEELDLREKQALEKARLAEELGDLKSE 262
           RL  VPW Q LDII+Q K L  R +G+V+ IAPK+E++ +EK   E     E L  L+++
Sbjct: 314 RLKDVPWDQALDIIMQAKNLGMRKNGSVLWIAPKDEINAKEKLEFEAKATIENLEPLRTQ 373

Query: 263 IIKINFAKASDIAAMIGGEG--------------NVNMLSERGSISIDERTNSLLIRELP 308
             ++N+ KA  IA  + G G                 +LS RGS+  + RTN L + ++P
Sbjct: 374 SFQLNYTKAIAIAQGLTGTGASAGGGGGGGGGGTTSRILSPRGSVIAESRTNQLFVSDIP 433

Query: 309 DNIAVIREIIESLDIPVKQVQIEARIVTVKEGNLEELGVR--WGVMSTNGSHS-----VG 361
             +A I ++I+ LDIPV+QV IEARIV   +   + LGV+   GV++ N S        G
Sbjct: 434 SRLAQIADLIQKLDIPVRQVLIEARIVEASDTFGKSLGVKLGGGVINRNNSFGTWPSVTG 493

Query: 362 GSIESNLWQKGLLADDEFPV------------DEFLNV---NLASTSANASSIAFQVAKL 406
           G   S     G                       F+N+   +   T  +A S AF +   
Sbjct: 494 GGTTSTSTSTGSTTTQTSTTTSPTVTFGSPTSSNFINLPAGDAGGTGNSAGSFAFSLFNS 553

Query: 407 GSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLESSSSGASTVAFKK 466
               +L+LE+SAL+ + K +++SSPR+IT ++  A IEQG EIPY +++SSGA++++F+K
Sbjct: 554 SFSRMLNLEISALEADGKGKLVSSPRVITADQTKALIEQGEEIPYQQATSSGATSISFRK 613

Query: 467 AVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVV 526
           AVL L+VTPQITP+  ++L L V++D RG  V T  G A  I+T+ + T+VLV NG TVV
Sbjct: 614 AVLKLEVTPQITPEGNIILTLDVSKDARG--VNTSAGPA--INTKHVQTEVLVENGGTVV 669

Query: 527 LGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576
           +GGIF+ +  N   +VP+LG++P LGALFR+      K+E+L+F+TPK++
Sbjct: 670 IGGIFELTETNDESRVPVLGEVPYLGALFRKRERVANKTEMLVFITPKMI 719