Pairwise Alignments

Query, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

Subject, 463 a.a., Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly from Variovorax sp. SCN45

 Score = 98.6 bits (244), Expect = 5e-25
 Identities = 67/251 (26%), Positives = 117/251 (46%), Gaps = 11/251 (4%)

Query: 328 VQIEARIVTVKEGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGLLADDEFPVDEFLNV 387
           VQ+E ++V      L++ G+   + ST  + S        ++    L    F  +  + V
Sbjct: 179 VQVEVKVVEFNRSVLKQAGLN--IFSTRPNSS---GFSFGVFSPSSLISSTFAANGQIAV 233

Query: 388 NLASTSANASSIAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGT 447
              +    A  + F  +K G G    L    L+    A +++ P L+  + Q A    G 
Sbjct: 234 QYNNPLTQAFDLLFNFSKAGIG----LNFGFLEGNGMARVLAEPTLVALSGQSASFLAGG 289

Query: 448 EIPYLESSSSGASTVAFKKAVLSLKVTPQITPDNRLVLDLSV-TQDRRGETVKTGTGEAV 506
           E+P       G  ++ +K   + L +TP +  + R+VL ++    D       T  G  V
Sbjct: 290 ELPIPVPQGLGTISIEYKPFGIGLTLTPTVLSNERIVLKVAPEASDLDYTNAITLNGVVV 349

Query: 507 -SIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKS 565
            +I T+R  T V + +GE+ ++GG+   +  ++  KVP+LGDLP++G  F +   QM + 
Sbjct: 350 PAITTRRADTTVELGDGESFIIGGLVSRTTTSNASKVPMLGDLPIIGTFFSKNNYQMNEK 409

Query: 566 ELLIFVTPKVV 576
           EL+I VTP +V
Sbjct: 410 ELVILVTPHLV 420