Pairwise Alignments

Query, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

Subject, 863 a.a., General secretion pathway protein D from Variovorax sp. SCN45

 Score =  115 bits (289), Expect = 6e-30
 Identities = 90/323 (27%), Positives = 153/323 (47%), Gaps = 28/323 (8%)

Query: 269 AKASDIAAMIGGEGNVNMLS-ERGSISI--DERTNSLLIRELPDNIAVIREIIESLDIPV 325
           A A       G  GN N  +   G +++  D  TN+L+I         +R +I++LD   
Sbjct: 365 ASAGGTGTQAGTSGNSNGAAFSAGGVTVQADATTNTLIIAAPEPMYRSLRRVIDTLDQRR 424

Query: 326 KQVQIEARIVTVKEGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGLLADDEFPVDEFL 385
            QV +E+ IV V E +  ELG++W     NG     G+            +    +   L
Sbjct: 425 AQVLVESLIVEVTERDASELGIQWMAGGGNGRGVRAGTNFGGATLNPNARNTIEAMPRGL 484

Query: 386 NVNLASTSANASSIAFQVAKLGSGTLLDLEL--SALQNESKAEIISSPRLITTNKQPAYI 443
           N+ +   + N           G G +L+L++   ALQ +  A I+S+P ++T + + A I
Sbjct: 485 NIGIVDGTVNLP---------GVGEILNLKMLARALQAKDGANILSTPNILTLDNEAASI 535

Query: 444 EQGTEIPYLE--------SSSSGASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRG 495
             G  +P++         SS++   T+  +   L L + PQI+    + LD+     +  
Sbjct: 536 MVGKTVPFVSGQYITNGNSSTNPFQTIQREDIGLKLNIRPQISEGGTVKLDIY----QEV 591

Query: 496 ETVKTGTGEAVSIDTQR--IGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGA 553
            T+ T   +   I T +  + T +LV++G+ +VLGG+ + S+ N  + VP LG LPV+G 
Sbjct: 592 STIDTQASDISGIVTNKRALDTSILVDDGQIMVLGGLMEDSVANGTEAVPGLGALPVVGN 651

Query: 554 LFRRTYEQMGKSELLIFVTPKVV 576
           LFR    Q  K+ L++F+ P V+
Sbjct: 652 LFRYDKRQRVKTNLMVFLRPYVI 674



 Score = 46.2 bits (108), Expect = 5e-09
 Identities = 42/184 (22%), Positives = 85/184 (46%), Gaps = 17/184 (9%)

Query: 161 KEGKLISINFQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDG-VPWQQ---VLDII 216
           K+ K++ +NF D  + +V+  +A + G N +    V G +TL  +G VP      +L   
Sbjct: 38  KDDKVV-LNFVDADITSVVSALARFLGRNFLFDPRVKGQITLVSEGEVPAATAYGMLSTA 96

Query: 217 LQVKGLDKRVDGNVILIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAA 276
           L+++G      G V  + P  +  L+      +       G L +   ++N+  A  +  
Sbjct: 97  LRMRGFAIVDVGEVSRVVPVADAKLQGGSVNTR----NPGGGLATRTFRLNYENAEAMLP 152

Query: 277 MIGGEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVKQVQIEARIVT 336
           ++       +++   SI+     N+L++ +  DN+  +  IIES+D P     ++A +V 
Sbjct: 153 VLKP-----LIAAENSINAYPANNTLVVTDYIDNLERLARIIESIDTP---TSLDAEVVK 204

Query: 337 VKEG 340
           ++ G
Sbjct: 205 LRNG 208