Pairwise Alignments

Query, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

Subject, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

 Score =  130 bits (327), Expect = 2e-34
 Identities = 108/389 (27%), Positives = 187/389 (48%), Gaps = 54/389 (13%)

Query: 229 NVILIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIGGEGNVNMLS 288
           N ILI+   ++  R K+ +++  + E      + ++ + +AKA D+  ++ G    N+ +
Sbjct: 235 NSILISGDPKVRERLKRLIKQLDV-EMAAKGNNRVVYLKYAKAEDLVEVLKGVSE-NLQA 292

Query: 289 ERGS------------ISIDERTNSLLIRELPDNIAVIREIIESLDIPVKQVQIEARIVT 336
           E+G+            I+    TNSL++    D +  + E+I  LDI   QV IEA IV 
Sbjct: 293 EKGTGQPTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVE 352

Query: 337 VKEGNLEELGVRWGVMSTN------------GSHSVGGSIESNLWQKGLLAD-------D 377
           + EG+   LGV+WG + +             G+  +G     +  Q   + D       +
Sbjct: 353 MAEGDGINLGVQWGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTQTKAVYDTNNNFLRN 412

Query: 378 EFPVDEFLNVNLASTSANASSIAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTN 437
           E    +     LAS  ++    A  +A +G  T L   ++A+ N+S + I+SSP +   +
Sbjct: 413 ETTTTKGDYTKLASALSSIQGAAVSIA-MGDWTAL---INAVSNDSSSNILSSPSITVMD 468

Query: 438 KQPAYIEQGTEIPYLESSSSGAS------TVAFKKAVLSLKVTPQITPDNRLVLDLSVTQ 491
              A    G E+P +  S++G++      TV  K+  + LKV PQI   N + L++    
Sbjct: 469 NGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIE--- 525

Query: 492 DRRGETVKTGTGEAVSIDTQ----RIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGD 547
               + V    G   ++D +    ++ T V+V +G+ +VLGG+       S  KVPLLGD
Sbjct: 526 ----QEVSNVLGANGAVDVRFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGD 581

Query: 548 LPVLGALFRRTYEQMGKSELLIFVTPKVV 576
           +P+LG LFR T  Q+ K  L++F+ P ++
Sbjct: 582 IPLLGQLFRSTSSQVEKKNLMVFIKPTII 610



 Score = 37.7 bits (86), Expect = 2e-06
 Identities = 37/170 (21%), Positives = 77/170 (45%), Gaps = 20/170 (11%)

Query: 186 NGFNLVVSDSVVGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILIAPKEELDLREKQ 245
           NG  ++     V N+++R       ++  ++ Q+  +D    GNV+   P   + +  + 
Sbjct: 120 NGDEVITQVVAVKNVSVR-------ELSPLLRQL--IDNAGAGNVVHYDPANIILITGRA 170

Query: 246 AL-----EKARLAEELGDLKSEIIKINFAKASDIAAMIGGEGNVNMLSE-----RGSISI 295
           A+     E  R  ++ GD + E++++N A A+++  ++                +     
Sbjct: 171 AVVNRLAEIIRRVDQAGDKEIEVVELNNASAAEMVRIVEALNKTTDAQNTPEFLKPKFVA 230

Query: 296 DERTNSLLIRELPDNIAVIREIIESLDIPVKQVQIEARIVTVKEGNLEEL 345
           DERTNS+LI   P     ++ +I+ LD+ +   +   R+V +K    E+L
Sbjct: 231 DERTNSILISGDPKVRERLKRLIKQLDVEM-AAKGNNRVVYLKYAKAEDL 279