Pairwise Alignments

Query, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

Subject, 621 a.a., putative Secretion protein from Pseudomonas putida KT2440

 Score =  116 bits (291), Expect = 2e-30
 Identities = 114/515 (22%), Positives = 236/515 (45%), Gaps = 75/515 (14%)

Query: 75  QKVQEGL-SIELLKTDVADDKLYLLDVKDFSTPVESVEVFRKEPSTQLVVTVDGEFQHDY 133
           ++ QEG+  +EL++T   D+++ L         +   ++F  E   + V+ +D + Q   
Sbjct: 108 RRAQEGIRQLELIRT--LDERIAL-----GQAALRQGDLFGAERYMREVLRLDPQNQKGM 160

Query: 134 TLKGKYLEVVISKLKADEKPKPKSVLEKEGKLISINFQDIPVRNVLQLIADYNGFNLVVS 193
           TL+     V      A   P+ +S LE+    +++ F+D  ++ + ++++   G N +  
Sbjct: 161 TLRSDIENV--QARTAQPYPQLRSKLERP---VTLEFRDANLKTIFEVLSQVAGINFIFD 215

Query: 194 DSVVGNL--TLRLDGVPWQQVLDIILQVKGL-DKRVDGNVILIAPKEELDLREKQALEKA 250
             +  ++  T+ +  V  +  + ++L+   L  K V+ N +++ P      ++ Q L   
Sbjct: 216 KDLRPDMKATIFVREVRIEDAIALLLEQNQLRQKIVNDNTVMVYPDSPQKTKDYQEL--- 272

Query: 251 RLAEELGDLKSEIIKINFAKASDIAAMIGGEGNVNMLSERGSISIDERTNSLLIRELPDN 310
                       +++  +  + D    +     V  + +   + +DER N+L +R+  D 
Sbjct: 273 ------------VMRTFYLTSIDANTALN---MVKTMLKTRDVFVDERLNTLTMRDTSDA 317

Query: 311 IAVIREIIESLDIPVKQVQIEARIVTVKEGNLEELGVRWGVMSTNGSHSVGGSIESNLWQ 370
           + +  ++++S D    +V +E  ++ V    + +LG++W                 N + 
Sbjct: 318 VRMAEKLLQSQDQSNPEVVLEVEVMEVATSRILDLGLQW----------------PNTF- 360

Query: 371 KGLLADDEFPVDEFLNVNLASTSANASSIAFQVAKLGSGTLLDLELSALQNESKAEIISS 430
            G+L+DD  PV     +       N+S I+   A        D +++ L         +S
Sbjct: 361 -GVLSDDGNPVSVLDQLK----GINSSRISIAPAPQAKINAQDKDINTL---------AS 406

Query: 431 PRLITTNKQPAYIEQGTEIPYLESSSSGAS-------TVAFKKAVLSLKVTPQITPDNRL 483
           P +  +N++ A I  G  +P + ++S  ++       +V +    L L+V P +  +N +
Sbjct: 407 PVIRVSNREQARIHIGQRVPIISATSVPSTQGPVITESVTYLDVGLKLEVQPTVHLNNEV 466

Query: 484 VLD--LSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDK 541
            +   L V+     E  + GT   V +DT+   T + +++GET VL G+ ++  N S +K
Sbjct: 467 AIKVALEVSNATPLEATRQGT-IPVQVDTRNAQTSLRLHDGETQVLAGLVRNDHNASGNK 525

Query: 542 VPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576
           +P LGD+P LG LF    + M KSEL++ +TP++V
Sbjct: 526 IPGLGDIPGLGRLFGSNKDDMSKSELVLAITPRIV 560