Pairwise Alignments

Query, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

Subject, 584 a.a., Type II secretion pathway protein XcpQ from Pseudomonas putida KT2440

 Score =  117 bits (293), Expect = 1e-30
 Identities = 85/302 (28%), Positives = 154/302 (50%), Gaps = 38/302 (12%)

Query: 293 ISIDERTNSLLIRELPDNIAVIREIIESLDIPVKQVQIEARIVTVKEGNLEELGVRW--- 349
           +  +E TN++++      +A  R I+E LDI   QV +EA I  V + + +ELGV+W   
Sbjct: 253 LEYEEGTNAVVMVGPDSELAAYRAIVEQLDIRRAQVVVEAIIAEVSDSSAQELGVQWLFA 312

Query: 350 ------GVMS--TNGSH--SVGGSIESNLWQKGLLADDEFPVDEFLNVNLASTSANASSI 399
                 G+++  +NG +  S+ G+  S         D+E   D      L ST+  A++ 
Sbjct: 313 DEKFGAGIVNFGSNGVNIASIAGAAASG--------DNEALGD------LLSTTTGATA- 357

Query: 400 AFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYL-----ES 454
              +   G G    + ++AL+ +S   ++S+P L+T +   A I  G E+P++     ++
Sbjct: 358 --GIGHFGGGFNFAMLVNALKGKSGFNLLSTPTLLTLDNAEASILVGQEVPFVTGSVTQN 415

Query: 455 SSSGASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIG 514
           +++   T+  K+  + L++ PQI  DN + LD+            T +   V  + + I 
Sbjct: 416 NANPYQTIERKEVGVKLRIKPQINIDNSVRLDIV---QEVSSIADTSSASDVITNKREIK 472

Query: 515 TQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPK 574
           T+V+V +   V+LGG+    ++ S  +VPLLGD+P LG LFR    +  K  L++F+ P+
Sbjct: 473 TKVMVEDNGLVILGGLISDELSTSDQRVPLLGDIPYLGRLFRSDATRNTKQNLMVFIRPR 532

Query: 575 VV 576
           ++
Sbjct: 533 IL 534