Pairwise Alignments

Query, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

Subject, 690 a.a., Predicted secretion system X protein GspD-like from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  125 bits (313), Expect = 7e-33
 Identities = 107/454 (23%), Positives = 213/454 (46%), Gaps = 55/454 (12%)

Query: 140 LEVVISKLKADEKPKPKSVLEKEGKLISINFQDIPVRNVLQLIADYNGFNLVVSDSVVGN 199
           LE V ++    ++P P+++    GK I+++F+++ ++ V  +IA  +G N V    V  +
Sbjct: 161 LERVRAEAPRPDEP-PQALAAALGKPITLDFREVQIKQVFDVIARTSGVNFVFDKDVRSD 219

Query: 200 --LTLRLDGVPWQQVLDIILQVKGLDKRV-DGNVILIAPKEELDLREKQALEKARLAEEL 256
             +T+ +     ++V+ ++L    L++++ + N ++I P      R              
Sbjct: 220 ARVTIFVRNASVEEVIGLVLTTNQLERKLLNDNTLMIYPNTPAKAR-------------- 265

Query: 257 GDLKSEIIKINFAKASDIAAMIGGEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIRE 316
            D K  + +  F   +D+      +  V  + +   I IDE+ N ++I++  + + +   
Sbjct: 266 -DYKELVTRSFFLANADVKQ---AQAMVRTIVKTRDIFIDEKLNLMIIKDTAEAVRLAER 321

Query: 317 IIESLDIPVKQVQIEARIVTVKEGNLEELGVR------WGVMSTNGSHSV--GGSIESNL 368
           ++ SLD+   +V ++  ++ V    L+ELG+R      +G +  N + ++   G  +SN 
Sbjct: 322 LLSSLDMAEPEVMLDVEVLEVTRSRLQELGLRFPDQIGYGRLQPNIATTIVNNGVTQSNT 381

Query: 369 WQKGLLADDEFPVDEFLNVNLASTSANASSIAFQVAKLGSGTLLDLELSALQNESKAEII 428
              G LA+    VD      L S  AN +      ++ G G  L                
Sbjct: 382 TLGGQLAEGY--VDLRNRSGLTSFVANPAITLNLRSEAGDGNTL---------------- 423

Query: 429 SSPRLITTNKQPAYIEQGTEIPYLESSSSG----ASTVAFKKAVLSLKVTPQITPDNR-- 482
           ++PR+   N++ A I  G ++P   ++S+     +S+V++    L L V P +  D+   
Sbjct: 424 ANPRIRVKNREKAKIHIGDKLPVFTTTSTANVGVSSSVSYLDVGLKLDVEPNVYLDDEVG 483

Query: 483 LVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKV 542
           + + L V+   R E        A  I T+  GT + + +GET VL G+      +S +++
Sbjct: 484 IKVQLEVSSVIR-EVTGPSNSLAYQIGTRSAGTVLRLRDGETQVLAGLINDEERSSANRL 542

Query: 543 PLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576
           P LGD+P +G LF  T +   K+E+++ +TP++V
Sbjct: 543 PGLGDIPAIGRLFSSTRDNNSKTEIVLLITPRIV 576