Pairwise Alignments

Query, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

Subject, 456 a.a., Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  110 bits (274), Expect = 2e-28
 Identities = 83/272 (30%), Positives = 134/272 (49%), Gaps = 15/272 (5%)

Query: 308 PDNIAVIREIIESLDIPVKQVQIEARIVTVKEGNLEELGVR-WGVMSTNGSHSVGGSIES 366
           PD  A+      +L++  + VQ+E +IV   +  L++ G+  +         S G    S
Sbjct: 154 PDKAALADR--STLNVKSQTVQVEVKIVEFNKRVLKQAGLNLFSTAPNKHGFSFGVFSPS 211

Query: 367 NLWQKGLLADDEFPVDEFLNVNLASTSANASSIAFQVAKLGSGTLLDLELSALQNESKAE 426
           +L   G   +  F V+       +S  A A S+     K   G    L L  L+    A 
Sbjct: 212 SLQSYGFDRNASFTVEA------SSPLAQAFSLLLGFGKANIG----LNLGLLEGNGLAR 261

Query: 427 IISSPRLITTNKQPAYIEQGTEIPYLESSSSGASTVAFKKAVLSLKVTPQITPDNRLVLD 486
           +++ P L+  + Q A    G EIP   +   G +++ +K   + L V+P +  + R+VL 
Sbjct: 262 VLAEPTLVALSGQSANFLAGGEIPVPVAQGLGTTSIEYKPFGIGLTVSPTVLSNQRIVLK 321

Query: 487 LSV-TQDRRGETVKTGTGEAV-SIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPL 544
           ++    D       T +G AV +I T+R  T V + +GE+ V+GG+   +  +SVDKVP+
Sbjct: 322 VAPEASDLDYTNAVTLSGVAVPAITTRRADTTVELGDGESFVIGGLVSRTTTSSVDKVPM 381

Query: 545 LGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576
           LGDLPVLG +F+R   Q  + EL+I VTP +V
Sbjct: 382 LGDLPVLGTVFKRQDYQQNERELVIVVTPHLV 413