Pairwise Alignments

Query, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

Subject, 424 a.a., DNA uptake porin HofQ from Pectobacterium carotovorum WPP14

 Score =  298 bits (763), Expect = 3e-85
 Identities = 168/413 (40%), Positives = 265/413 (64%), Gaps = 24/413 (5%)

Query: 166 ISINFQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVLDIILQVKGLDKR 225
           +S+ F+D P+  VLQ +AD+   N+V++  V GNL+LRL  +PW+Q LDI+L++  L   
Sbjct: 30  VSMAFEDSPIPRVLQALADHQQLNVVIAPGVTGNLSLRLADIPWEQALDIVLRMGKLSVE 89

Query: 226 VDGNVILIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIGGEGNVN 285
            +GNV+++ P + L+  +K+  E A    +   L +  + + +A A+++AA +  +    
Sbjct: 90  RNGNVLMVFPADHLESLQKERDEHAAEQAQKLPLHNISVALQYADATEVAASVQAQRG-T 148

Query: 286 MLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVKQVQIEARIVTVKEGNLEEL 345
           +LS RGS+++D+RTN+LLIR+  + +  +   ++ LD+P+ QVQ+ A IVT+   +L+ L
Sbjct: 149 LLSTRGSVTVDKRTNTLLIRDTEEALTQLEPWVKELDLPLAQVQLAAHIVTISSEHLQAL 208

Query: 346 GVRWGVMSTNGSHSVGGSIESNLWQKGLLADDEFPVDEFLNVNLASTSANASSIAFQVAK 405
           GV WG+   + ++    ++  N +  GL      PVD             A +  F +A+
Sbjct: 209 GVNWGLGEGDVANK---ALRLNNFNVGL------PVD-----------TPAVNAGFHLAR 248

Query: 406 LGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPY-LESSSSGASTVAF 464
           L +G LLDLEL AL+ ES+ EII+SPRL T ++Q A I+QGTEIPY + S +SG++++ F
Sbjct: 249 L-NGRLLDLELMALEQESQVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEF 307

Query: 465 KKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTG-TGEAVSIDTQRIGTQVLVNNGE 523
           K+AVL ++VTP I    R+ L+L ++Q+  G+T+K G  GEA++ID Q I TQV V +GE
Sbjct: 308 KEAVLGMEVTPDILRAGRITLNLKISQNMPGQTIKQGDNGEALAIDKQEIQTQVTVADGE 367

Query: 524 TVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576
           T+VLGGIFQ    NS  +VPLLG++PV G LFR   +Q  + EL+IF+TP ++
Sbjct: 368 TIVLGGIFQQQKKNSDRQVPLLGEVPVFGHLFRNHTQQHTRRELVIFITPTLI 420