Pairwise Alignments

Query, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

Subject, 497 a.a., Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  100 bits (249), Expect = 1e-25
 Identities = 72/293 (24%), Positives = 138/293 (47%), Gaps = 51/293 (17%)

Query: 296 DERTNSLLIRELPDNIAVIREIIESLDIPVKQVQIEARIVTVKEGNLEELGVRWGVMSTN 355
           D R N++++R+   N+A  R++I  LD   + ++I  +I+ V  G++ +LG+ WG   + 
Sbjct: 237 DPRQNAVIVRDYAANMAGYRKLITELDQRQQMIEISVKIIDVNAGDINQLGIDWGTAVSL 296

Query: 356 GSHSVGGSIESNLWQKGLLADDEFPVDEFLNVNLASTSANASSIAFQVAKLGSGTLLDLE 415
           G   +                           N       AS  +  ++   +     + 
Sbjct: 297 GGKKIA-------------------------FNTGLNDGGASGFSTVISDTSN---FMVR 328

Query: 416 LSALQNESKAEIISSPRLITTNKQPAYIE---------QGTEIPYLESSSSGASTVAFKK 466
           L+AL+  S+A ++S P ++T N   A ++         QG ++  LES ++G+       
Sbjct: 329 LNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFYTKLQGEKVAKLESITTGSL------ 382

Query: 467 AVLSLKVTPQITPDN---RLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGE 523
               L+VTP++  DN   +++L+L++   ++ +T ++ T     +    I +Q  +  G+
Sbjct: 383 ----LRVTPRLLNDNGTQKIMLNLNIQDGQQSDT-QSETDPLPEVQNSEIASQATLLAGQ 437

Query: 524 TVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576
           +++LGG  Q    +S +K+PLLGD+PV+G LFR    Q+     L  +   VV
Sbjct: 438 SLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQVHSVIRLFLIKASVV 490