Pairwise Alignments

Query, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

Subject, 650 a.a., putative general protein secretion protein (VIMSS) from Escherichia coli BW25113

 Score =  127 bits (318), Expect = 2e-33
 Identities = 109/376 (28%), Positives = 181/376 (48%), Gaps = 36/376 (9%)

Query: 223 DKRVDGNVILIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIGG-- 280
           DKR   N ++I+  E+   R    L K+   EE  +  + +  + +AKA+++  ++ G  
Sbjct: 233 DKRT--NSLIISGPEKARQRITSLL-KSLDVEESEEGNTRVYYLKYAKATNLVEVLTGVS 289

Query: 281 ------EGNVNMLSERGS-----ISIDERTNSLLIRELPDNIAVIREIIESLDIPVKQVQ 329
                 +GN    S  G+     I+ DE+TNSL+I         +  +I  LDI   QV 
Sbjct: 290 EKLKDEKGNARKPSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIRRAQVL 349

Query: 330 IEARIVTVKEGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGLLADDEFPVDEFLNVNL 389
           +EA IV V++GN   LGV+W       + +VG    +N    GL   +          N 
Sbjct: 350 VEAIIVEVQDGNGLNLGVQWA------NKNVGAQQFTNT---GLPIFNAAQGVADYKKNG 400

Query: 390 ASTSANASSIAFQVAKLGSGTLLDLE----LSALQNESKAEIISSPRLITTNKQPAYIEQ 445
             TSAN +   F      +    + +    L+AL + +K +I+++P ++T + + A    
Sbjct: 401 GITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNV 460

Query: 446 GTEIPYLESSSSGA-----STVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKT 500
           G ++P L  S + +     +TV  K     LKVTPQ+   + ++L++   Q+       +
Sbjct: 461 GQDVPVLSGSQTTSGDNVFNTVERKTVGTKLKVTPQVNEGDAVLLEIE--QEVSSVDSSS 518

Query: 501 GTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYE 560
            +    + +T+ I   VLV  GETVVLGG+        V KVPLLGD+P++G LFR T  
Sbjct: 519 NSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTST 578

Query: 561 QMGKSELLIFVTPKVV 576
           +  K  L++F+ P ++
Sbjct: 579 ERAKRNLMVFIRPTII 594