Pairwise Alignments

Query, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

Subject, 412 a.a., DNA catabolic putative fimbrial transporter from Escherichia coli BL21

 Score =  256 bits (655), Expect = 9e-73
 Identities = 154/413 (37%), Positives = 248/413 (60%), Gaps = 29/413 (7%)

Query: 166 ISINFQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVLDIILQVKGLDKR 225
           +++   D+PV  VLQ +A+    NLVVS  V G ++L L  VPW+Q L  +++  GL  R
Sbjct: 24  VTLMVDDVPVAQVLQALAEQEKLNLVVSPDVSGTVSLHLTDVPWKQALQTVVKSAGLITR 83

Query: 226 VDGNVILI-APKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIGGEGNV 284
            + N++ + +   + +   +Q  E+AR    L  L++  I + +A A ++A    GE   
Sbjct: 84  QEDNILSVHSIAWQNNNIARQEAEQARAQANL-PLENRSITLQYADAGELAK--AGE--- 137

Query: 285 NMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVKQVQIEARIVTVKEGNLEE 344
            +LS +GS+++D+RTN LL+R+    ++ + + +  +D+PV QV++ A IVT+ E +L E
Sbjct: 138 KLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVELSAHIVTINEKSLRE 197

Query: 345 LGVRWGVMSTNGSHSVGGSIESNLWQKGLLADDEFPVDEFLNVNLASTSANASSIAFQVA 404
           LGV+W +     +  VG        Q   L  D       L+V  A+T      + F + 
Sbjct: 198 LGVKWTLADAQHAGGVG--------QVTTLGSD-------LSVATATTH-----VGFNIG 237

Query: 405 KLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPY-LESSSSGASTVA 463
           ++ +G LLDLELSAL+ + + +II+SPRL+ ++ QPA I+QG+EIPY + S  SGA++V 
Sbjct: 238 RI-NGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVE 296

Query: 464 FKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGE 523
           FK+AVL ++VTP +    R+ L L ++Q+  G+ ++   GE ++ID Q I TQV V +GE
Sbjct: 297 FKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGE 356

Query: 524 TVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576
           T+ LGGIF     +  D VPLLGD+P  G LFR   ++  + EL++F+TP++V
Sbjct: 357 TLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409