Pairwise Alignments

Query, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

Subject, 686 a.a., putative type II secretion protein GspD from Escherichia coli BL21

 Score =  141 bits (356), Expect = 8e-38
 Identities = 105/349 (30%), Positives = 179/349 (51%), Gaps = 40/349 (11%)

Query: 261 SEIIKINFAKASDI------------AAMIGGEGNVNMLSERGSISIDERTNSLLIRELP 308
           S++  + ++KA D+            AA    EG V    E  SI+  + +N+L++    
Sbjct: 284 SQVFYLKYSKAEDLVDVLKQVSGTLTAAKEEAEGTVGSGREVVSIAASKHSNALIVTAPQ 343

Query: 309 DNIAVIREIIESLDIPVKQVQIEARIVTVKEGNLEELGVRW-----GVMS-TNGSH---- 358
           D +  ++ +IE LDI   QV +EA IV V EG+    GV+W     G+M   NG+     
Sbjct: 344 DIMQSLQSVIEQLDIRRAQVHVEALIVEVAEGSNINFGVQWASKDAGLMQFANGTQIPIG 403

Query: 359 SVGGSIESNLWQKGLLADDE---FPVDEFLNVNLASTSANASSIAFQVAKLGSGTLLDLE 415
           ++G +I     QKG     E     ++   N +L++ +   S  +     +  G  + L 
Sbjct: 404 TLGAAISQAKPQKGSTVISENGATTINPDTNGDLSTLAQLLSGFSGTAVGVVKGDWMAL- 462

Query: 416 LSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLESSSSGAS------TVAFKKAVL 469
           + A++N+S + ++S+P + T + Q A+   G ++P L  S+ G++      TV  KK  +
Sbjct: 463 VQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQDVPVLTGSTVGSNNSNPFNTVERKKVGI 522

Query: 470 SLKVTPQITPDN--RLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVL 527
            LKVTPQI   N  ++V++  V++      V+  T   V    +++ T VL N+GE +VL
Sbjct: 523 MLKVTPQINEGNAVQMVIEQEVSK------VEGQTSLDVVFGERKLKTTVLANDGELIVL 576

Query: 528 GGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576
           GG+       SV KVPLLGD+P++G LF+ T ++  K  L++F+ P ++
Sbjct: 577 GGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMVFIRPTIL 625



 Score = 38.1 bits (87), Expect = 1e-06
 Identities = 36/148 (24%), Positives = 67/148 (45%), Gaps = 18/148 (12%)

Query: 184 DYNGFNLVVSDSVVGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILIAPKEELDLRE 243
           +Y G  +V     V N+++R       ++  I+ Q+  +D    GNV+   P   + L  
Sbjct: 137 NYAGDEMVTKVVPVRNVSVR-------ELAPILRQM--IDSAGSGNVVNYDPSNVIMLTG 187

Query: 244 KQAL-----EKARLAEELGDLKSEIIKINFAKASDIAAMIGG----EGNVNMLSERGSIS 294
           + ++     E  +  +  G+   E+I ++ A AS+IA ++       G     + +  I 
Sbjct: 188 RASVVERLTEVIQRVDHAGNRTEEVIPLDNASASEIARVLESLTKNSGENQPATLKSQIV 247

Query: 295 IDERTNSLLIRELPDNIAVIREIIESLD 322
            DERTNS+++   P     +R +I  LD
Sbjct: 248 ADERTNSVIVSGDPATRDKMRRLIRRLD 275