Pairwise Alignments

Query, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

Subject, 590 a.a., Type IV pilus biogenesis and competence protein PilQ precursor from Alteromonas macleodii MIT1002

 Score =  490 bits (1262), Expect = e-143
 Identities = 269/540 (49%), Positives = 366/540 (67%), Gaps = 7/540 (1%)

Query: 40  SATANQLENIDFRVNKEKAAVLIVELASPSAVVDVQKVQEGLSIELLKTDVADDKLYLLD 99
           S     + NIDF       AV +V     +  + + + Q  +S+ L  T + +D+L  L+
Sbjct: 55  STVTTTVTNIDFTQAANNTAVTLVSFEGQAPKLQLIESQGKVSLTLPNTKLGEDQLVELN 114

Query: 100 VKDFSTPVESVEVFRKEPSTQLVVTVDGEFQHDYTLKGKYLEVVISKLKADEKPKPKSVL 159
           V DF T V ++E F  +   ++ V   G      T+K   + + I+ + + ++   ++  
Sbjct: 115 VTDFGTLVSTIETFEDKDGARIEVNYSGPVTVKNTVKDGVIRMAITPMDSAQQDALEAEK 174

Query: 160 EKEGKLISINFQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVLDIILQV 219
           +  G  IS++FQD+PVR VLQ+IA  NGFNLV +D+V GN+T+ L GVPW Q LD+IL+V
Sbjct: 175 KYTGDPISLDFQDVPVRQVLQIIAQVNGFNLVTTDTVTGNVTISLSGVPWDQALDMILRV 234

Query: 220 KGLDKRVDGNVILIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIG 279
           KGLDKR++GN++LIAP EEL  RE QAL+  +   +L  L +  I +N+AKA+ +A ++ 
Sbjct: 235 KGLDKRLEGNILLIAPAEELSARETQALQSKKQVSDLASLHTVNIPVNYAKAAALATILK 294

Query: 280 G-EGNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVKQVQIEARIVTVK 338
             EG +  LSERG +++DERTN+LLIR+   +I   R+ I +LDIPVKQV IE+R+VTV 
Sbjct: 295 STEGGI--LSERGGVTVDERTNTLLIRDTLASIDEARKTINALDIPVKQVLIESRMVTVL 352

Query: 339 EGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGLLADDEFPVDEFLNVNLASTSANASS 398
           +   E+LGVRWG       + V GS+E+     G +      +D  LNVNL  TSA A S
Sbjct: 353 DDVDEQLGVRWGFSDRQDDNGVSGSLEAADTIAGGIVPS---IDNRLNVNLPVTSA-AGS 408

Query: 399 IAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLESSSSG 458
           I FQ+A L  GT+LDLELSAL++E+K EII+SPR+   N+  AYIEQGTEIPY++++SSG
Sbjct: 409 IGFQIASLVDGTILDLELSALESENKGEIIASPRITVANQHEAYIEQGTEIPYVQATSSG 468

Query: 459 ASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVL 518
           A++V FKKAVLSLKVTP ITPDNR++LDL VTQD RGETV T TG+AV+IDTQ I TQVL
Sbjct: 469 ATSVEFKKAVLSLKVTPHITPDNRIILDLVVTQDTRGETVSTSTGDAVAIDTQEIKTQVL 528

Query: 519 VNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVVIQ 578
           V NGET+VLGGIFQ + ++ V KVPL GDLPV+GALFR + +   K ELLIFVTPK+V +
Sbjct: 529 VENGETIVLGGIFQQTSSDGVSKVPLFGDLPVVGALFRNSSQLQQKRELLIFVTPKIVTE 588