Pairwise Alignments

Query, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

Subject, 726 a.a., Type 3 secretion system secretin from Acinetobacter radioresistens SK82

 Score =  379 bits (974), Expect = e-109
 Identities = 229/564 (40%), Positives = 332/564 (58%), Gaps = 35/564 (6%)

Query: 43  ANQLENIDFRVNKEKAAVLIVELASPSAVVDVQKVQEGLSIELLKTDVADDKLYLLDVKD 102
           A  + NI F+   +    ++++  +P+   DVQ+    + + +L   +    +  L++ D
Sbjct: 160 AQGISNIGFQRGSQGEGQVLIDFLNPNTPADVQQQGSKVIVRMLGNKIPSHLIRRLNMND 219

Query: 103 FSTPVESVEVFRKEPSTQLVVTVDGEFQHDYTLKGKYLEVVISKLKADEKPKPKSVLEKE 162
           F+TPV +V+ + +  +  + +   G +++        L V + + +     K +S     
Sbjct: 220 FATPVSTVDAYNEGGNGIITIQSTGSYEYMAYQTENRLTVSLKRPEEKSTVKTRSAPNYS 279

Query: 163 GKLISINFQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVLDIILQVKGL 222
           GK +S++FQDI VR VLQL+AD+ G NLV +DSV GN+TLRL  VPW Q LDIIL+ K L
Sbjct: 280 GKKVSLDFQDIEVRRVLQLLADFTGINLVAADSVQGNITLRLKDVPWDQALDIILKTKNL 339

Query: 223 DKRVDGNVILIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMI---- 278
           DKR +G+VI IAP  EL   E++  +    +  L  L++E I++N+AKA DI  +I    
Sbjct: 340 DKRRNGDVIWIAPVAELIKAEEEEAKAIAQSTRLMPLQTEYIQLNYAKAVDIEKLITQGR 399

Query: 279 -GGEGNVN---------------MLSERGSISIDERTNSLLIRELPDNIAVIREIIESLD 322
             G G+ N               +LS RG+ISID RTN+L+I +    +  IR +I+ LD
Sbjct: 400 NSGNGSANGASNNTEALGDSVGSLLSPRGTISIDPRTNTLIINDTAQKLDQIRRMIDLLD 459

Query: 323 IPVKQVQIEARIVTVKEGNLEELGVRWGVMS----TNGSHSVGGSIESNLWQKGLLADD- 377
           + VKQV +EARIV       +E+GV+WG++S     N S  VGGS E+ LW      DD 
Sbjct: 460 VAVKQVMVEARIVRASTDFTKEMGVKWGILSQGITRNNSLLVGGS-ETTLWNLRDPDDDG 518

Query: 378 EFPVD--EFLNVNLASTSANASSIAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLIT 435
           ++ ++  + LNV+L  T++ AS IAF +  L S  +LDLELSALQ +   E+IS+P+++T
Sbjct: 519 KYTIERPQNLNVDLGVTASGASRIAFGLISL-SDFMLDLELSALQADGYGEVISTPKVLT 577

Query: 436 TNKQPAYIEQGTEIPYLESSSSGA---STVAFKKAVLSLKVTPQITPDNRLVLDLSVTQD 492
            +KQ A +  GT+IPY  S   GA   ST  F  A LSL VTP ITPD ++ + L++T D
Sbjct: 578 ADKQQARVASGTQIPYQSSEGGGANAVSTTEFVDATLSLNVTPSITPDGKIQMLLNITSD 637

Query: 493 RRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLG 552
             G    TG    ++I+   I T VLVNNGETVVLGGIF+    N+  KVP+LGDLP +G
Sbjct: 638 TPGNPTPTG---QIAINKNEINTNVLVNNGETVVLGGIFEQETRNTQTKVPVLGDLPGVG 694

Query: 553 ALFRRTYEQMGKSELLIFVTPKVV 576
            LFRR  +   K ELLIFVTP++V
Sbjct: 695 RLFRRDAKSNNKRELLIFVTPRIV 718