Pairwise Alignments

Query, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

Subject, 751 a.a., Secretin XcpQ from Acinetobacter radioresistens SK82

 Score =  110 bits (276), Expect = 2e-28
 Identities = 91/315 (28%), Positives = 154/315 (48%), Gaps = 30/315 (9%)

Query: 280 GEGNVNMLSERG-SISIDERTNSLLIRELPDNIAVIREIIESLDIPVKQVQIEARIVTVK 338
           G+  ++  +  G SI  D   N+L+++  P  +  I   I+ LDI  +QV IEA I+ V 
Sbjct: 341 GQNPISSFNANGVSIIADTNQNALVVKADPQLMREIESAIQQLDIRRQQVLIEAAIIEVA 400

Query: 339 EGNLEELGVRWGVMSTNGS------HSVGGSIESNLWQKGLLADDEFPVDEFLNVNLAST 392
             + ++LGV+W +   +         +VG S+ S     G LA            N AS 
Sbjct: 401 GDDADQLGVQWALGDISSGIGLVNFTNVGSSLAS--LAAGYLAGGS------ALANAASN 452

Query: 393 SANASSIA--FQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIP 450
              +S +   ++    GS  L    + AL++ +K+ ++S+P ++T + + AYI  G  +P
Sbjct: 453 LRGSSLLLGDYREGADGSRRLYGALIQALKDNTKSNLLSTPSIVTMDNEEAYIVVGQNVP 512

Query: 451 YLESS----SSGAS---TVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTG 503
           ++  S    ++G +   TV  K   ++LKV P I  +  + L++    ++    V+   G
Sbjct: 513 FVTGSVTTNANGVNPYTTVERKDVGVTLKVIPHIGENGTVRLEV----EQEVSNVQPNKG 568

Query: 504 EAVSIDTQR--IGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQ 561
           +A  + T +  I T VL  +G+TVVLGG+   +   S   VP LG +P +G LFR     
Sbjct: 569 QATDLVTSKRAIKTAVLAEHGQTVVLGGLISDNSIYSRQAVPGLGAIPGIGRLFRSDSNS 628

Query: 562 MGKSELLIFVTPKVV 576
             K  LL+F+ P +V
Sbjct: 629 NEKRNLLVFIHPTIV 643



 Score = 41.6 bits (96), Expect = 1e-07
 Identities = 46/202 (22%), Positives = 89/202 (44%), Gaps = 17/202 (8%)

Query: 168 INFQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPW--QQVLDI---ILQVKGL 222
           IN +D  +   +  +AD  G N  V   V GN+T+ +   P    +V D+   +L V G+
Sbjct: 34  INLRDADLTAFINEVADITGKNFAVDPRVRGNVTV-ISNKPLNKNEVYDLFLGVLNVNGV 92

Query: 223 DKRVDGNVILIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIGGEG 282
                GN I + P  + +++       AR       + + +I +     +D+   +    
Sbjct: 93  VAIPSGNTIKLVP--DSNVKSSGVPYDARRNARGDQVVTRVIWLENTNPNDLIPALR--- 147

Query: 283 NVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVKQVQIEARIVTVKEGNL 342
              ++ +   ++    TN+L++ +   NIA +  I+ +LD    Q  IEA  +T++    
Sbjct: 148 --PLMPQFAHLAAVAGTNALIVSDRASNIAQLETIVRNLD-GTGQNDIEA--ITLQSSQA 202

Query: 343 EE-LGVRWGVMSTNGSHSVGGS 363
           EE +G+   + ST  +    G+
Sbjct: 203 EEVIGLLESMSSTGAAKDFSGA 224



 Score = 31.2 bits (69), Expect = 2e-04
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 262 EIIKINFAKASDIAAMIGGEGNVNMLSE----RGSISIDERTNSLLIRELPDNIAVIREI 317
           E I +  ++A ++  ++    +     +    R  I  D RTN +LI+  P     IR +
Sbjct: 193 EAITLQSSQAEEVIGLLESMSSTGAAKDFSGARVRIMADNRTNRILIKGDPATRKRIRHM 252

Query: 318 IESLDIP 324
           IE LD+P
Sbjct: 253 IEMLDVP 259