Pairwise Alignments

Query, 470 a.a., 30S ribosomal protein S12 methylthiotransferase RimO from Vibrio cholerae E7946 ATCC 55056

Subject, 424 a.a., hypothetical protein from Agrobacterium fabrum C58

 Score =  136 bits (342), Expect = 2e-36
 Identities = 109/408 (26%), Positives = 185/408 (45%), Gaps = 32/408 (7%)

Query: 38  VSLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGFIDSAVQESLDTIGEALK 97
           ++ GC  N  +SE +  +    G         ++ V+VNTC     AV+++   I  A +
Sbjct: 7   ITFGCRLNTYESEVMRAEAEKAGL--------NNAVLVNTCAVTGEAVRQARQAIRRARR 58

Query: 98  EN--GKVIVTGCLGAREDEIRQVHPNVLGITGPH------AYQNVLEHVHQYAPKPAHNP 149
           +N   ++IVTGC    E +     P V  + G        +Y+ + +       K   N 
Sbjct: 59  DNPHARIIVTGCAAQTEKQTFADMPEVDAVLGNEEKLKSASYRALPDFGVSAEEKLRVND 118

Query: 150 FTSL--VPDHGVKLTPKHY-AYLKISEGCNHRCTFCIIPSMRGDLVSRPVGEIIGEAERL 206
             S+       VK    H  A++++  GC+HRCTFCIIP  RG+  S P+G ++ +A RL
Sbjct: 119 IMSIKATAPQMVKHIDGHVRAFIQVQNGCDHRCTFCIIPYGRGNSRSVPMGAVVDQARRL 178

Query: 207 KNAGVKELLVISQDTSAYGVDT--KHSLGFANGSPVRHNIKALSEELGKMGIWVRLHYVY 264
             +G  E+++   D ++YG D   + SLG+          K L +++  + I +RL  + 
Sbjct: 179 TESGYCEIVLTGVDATSYGADLPGEPSLGYL--------AKTLLKQVPDI-IRLRLSSID 229

Query: 265 PYPHVDEIIPLMA-EGKVLPYLDIPFQHASPRVLKMMKRPGQAERTLERIKKWREICPEL 323
                  ++ L+A E + +P+L +  QH    +LK MKR       +    + R + P++
Sbjct: 230 SIEADHHLMDLIADEPRFMPHLHLSLQHGDDMILKRMKRRHLRADAIRFCNEVRSLRPDI 289

Query: 324 VIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVGCFKYSPVEGAAANEIEDQIPEDVKQD 383
              +  I GFP ETEE  +      +E  +  +  F YSP EG  A  +  Q+   + ++
Sbjct: 290 AFGADMIAGFPTETEEMLENAATLAEECGISSLHVFPYSPREGTPAVRM-PQLDRALVKE 348

Query: 384 RFERFMLVQQEISAAKLQKRIGSTMQVLIDEVDEEGAIGRTYADAPEI 431
           R  R     + +  A LQ  +GS   VL++          T   AP++
Sbjct: 349 RAGRLRARGEALKQAHLQNMVGSVQTVLVENSGFAHTDNFTLVAAPDL 396