Pairwise Alignments

Query, 638 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 635 a.a., fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) from Escherichia coli BW25113

 Score =  277 bits (709), Expect = 9e-79
 Identities = 185/623 (29%), Positives = 328/623 (52%), Gaps = 29/623 (4%)

Query: 15  PLLEQASATIHPGDKVGLVGKNGCGKSTLFALLKDELTIDAGSFSKPAHWELAWVAQETP 74
           PLL+ A   I   ++V LVG+NG GKSTL  +L  E  +D G         +A + Q+ P
Sbjct: 17  PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNREQGLDDGRIIYEQDLIVARLQQDPP 76

Query: 75  A-LDRTALEYVIDGDRE-------YRELERQLMDAEAADNGTKVADLHGKIEMVGGYSIR 126
             ++ +  ++V +G  E       Y ++ R +M+  +  N  ++A +  +++    + + 
Sbjct: 77  RNVEGSVYDFVAEGIEEQAEYLKRYHDISRLVMNDPSEKNLNELAKVQEQLDHHNLWQLE 136

Query: 127 ARASELLDGLGFTQEQMSWSLTQFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVM 186
            R +E+L  LG        +L+  SGGW  +  L +AL+    +LLLDEPTNHLD++ + 
Sbjct: 137 NRINEVLAQLGLDPNV---ALSSLSGGWLRKAALGRALVSNPRVLLLDEPTNHLDIETID 193

Query: 187 WLERWLQSYPGTLILISHDRDFLDPIVNRIVHIENQTLNEYTGNYSSFETQRAQKMLQQQ 246
           WLE +L+++ GT+I ISHDR F+  +  RIV ++   L  Y GNY  +  ++ + +  ++
Sbjct: 194 WLEGFLKTFNGTIIFISHDRSFIRNMATRIVDLDRGKLVTYPGNYDQYLLEKEEALRVEE 253

Query: 247 AIYQKQQKQMAHMQSYIDRFRYKASKARQAQSRIKALE--RMEKVLPAQFDNPFSFEFRE 304
               +  +++A  + +I R   KA + R  + R++AL+  R E+    +       +  E
Sbjct: 254 LQNAEFDRKLAQEEVWI-RQGIKARRTRN-EGRVRALKAMRRERGERREVMGTAKMQVEE 311

Query: 305 PAALPNPILMMDQVAAGYGDHLILEKIRLNLVPGSRIGLLGRNGAGKSTLIKLLSGELKP 364
            +     +  M+ V        +++     ++ G +I L+G NG GK+TL+KL+ G+L+ 
Sbjct: 312 ASRSGKIVFEMEDVCYQVNGKQLVKDFSAQVLRGDKIALIGPNGCGKTTLLKLMLGQLQA 371

Query: 365 QSGDCTYSQGVKIGYFAQHQLETLHPEETPLQHM----MQIAPDKNELELRNYLGSFGFH 420
            SG       +++ YF QH+ E L P++T + ++     ++  +     +  YL  F FH
Sbjct: 372 DSGRIHVGTKLEVAYFDQHRAE-LDPDKTVMDNLAEGKQEVMVNGKPRHVLGYLQDFLFH 430

Query: 421 GEKALEKVAPFSGGEKARLVLALIVWQKPNLLLLDEPTNHLDLDMRQALTLALQSYEGAM 480
            ++A+  V   SGGE+ RL+LA +  +  NLL+LDEPTN LD++  + L   + SY+G +
Sbjct: 431 PKRAMTPVRALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELIDSYQGTV 490

Query: 481 VIVSHDRYLLRATTDDLYLVH-DHQVGPFDGDLNDYYKWLTDQQKAERKETQPTNTANSA 539
           ++VSHDR  +  T  + ++     ++G + G  +D       QQ+      QP     + 
Sbjct: 491 LLVSHDRQFVDNTVTECWIFEGGGKIGRYVGGYHD----ARGQQEQYVALKQPA-VKKTE 545

Query: 540 NSAAAKKEQKRREADFRKLTAPIRKKLTQLEEKLDKLNHVVSEMEAQLSDTSLYEAQNKA 599
            +AAAK E  +R +   KL+  ++++L QL + L+ L   +  ++ Q++D S +   ++ 
Sbjct: 546 EAAAAKAETVKRSSS--KLSYKLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQ 603

Query: 600 TLTEVLAKQAAAKSELEQVELEW 622
           T  +VLA  AAA+ ELEQ    W
Sbjct: 604 T-QKVLADMAAAEQELEQAFERW 625



 Score =  115 bits (288), Expect = 6e-30
 Identities = 87/285 (30%), Positives = 133/285 (46%), Gaps = 34/285 (11%)

Query: 13  GKPLLEQASATIHPGDKVGLVGKNGCGKSTLFALLKDELTIDAGSFSKPAHWELAWVAQE 72
           GK L++  SA +  GDK+ L+G NGCGK+TL  L+  +L  D+G        E+A+  Q 
Sbjct: 331 GKQLVKDFSAQVLRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHVGTKLEVAYFDQH 390

Query: 73  TPAL--DRTALEYVIDGDREYRELERQLMDAEAADNGTKVADLHGKIEMVGGYSIRARAS 130
              L  D+T ++ + +G +E                      ++GK   V GY       
Sbjct: 391 RAELDPDKTVMDNLAEGKQEVM--------------------VNGKPRHVLGY------- 423

Query: 131 ELLDGLGFTQEQMSWSLTQFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVMWLER 190
             L    F  ++    +   SGG R RL LA+  +  S+LL+LDEPTN LD++ +  LE 
Sbjct: 424 --LQDFLFHPKRAMTPVRALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEE 481

Query: 191 WLQSYPGTLILISHDRDFLDPIVNRIVHIE-NQTLNEYTGNYSSFETQRAQKMLQQQAIY 249
            + SY GT++L+SHDR F+D  V      E    +  Y G Y     Q+ Q +  +Q   
Sbjct: 482 LIDSYQGTVLLVSHDRQFVDNTVTECWIFEGGGKIGRYVGGYHDARGQQEQYVALKQPAV 541

Query: 250 QKQQKQMAHMQSYIDRFRYKAS--KARQAQSRIKALERMEKVLPA 292
           +K ++  A     + R   K S    R+ +   + LE +E  L A
Sbjct: 542 KKTEEAAAAKAETVKRSSSKLSYKLQRELEQLPQLLEDLEAKLEA 586



 Score = 77.8 bits (190), Expect = 1e-18
 Identities = 62/256 (24%), Positives = 111/256 (43%), Gaps = 44/256 (17%)

Query: 312 ILMMDQVAAGYGDHLILEKIRLNLVPGSRIGLLGRNGAGKSTLIKLLSGELKPQSGDCTY 371
           ++ M      + D  +L+   L++    R+ L+GRNGAGKSTL+K+L+ E     G   Y
Sbjct: 3   LISMHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNREQGLDDGRIIY 62

Query: 372 SQGVKIGYFAQ----------------------------HQLETLHPEETPLQHMMQIAP 403
            Q + +    Q                            H +  L   +   +++ ++A 
Sbjct: 63  EQDLIVARLQQDPPRNVEGSVYDFVAEGIEEQAEYLKRYHDISRLVMNDPSEKNLNELAK 122

Query: 404 DKNELELRN----------YLGSFGFHGEKALEKVAPFSGGEKARLVLALIVWQKPNLLL 453
            + +L+  N           L   G     AL  +   SGG   +  L   +   P +LL
Sbjct: 123 VQEQLDHHNLWQLENRINEVLAQLGLDPNVALSSL---SGGWLRKAALGRALVSNPRVLL 179

Query: 454 LDEPTNHLDLDMRQALTLALQSYEGAMVIVSHDRYLLRATTDDLYLVHDHQVGPFDGDLN 513
           LDEPTNHLD++    L   L+++ G ++ +SHDR  +R     +  +   ++  + G   
Sbjct: 180 LDEPTNHLDIETIDWLEGFLKTFNGTIIFISHDRSFIRNMATRIVDLDRGKLVTYPG--- 236

Query: 514 DYYKWLTDQQKAERKE 529
           +Y ++L ++++A R E
Sbjct: 237 NYDQYLLEKEEALRVE 252