Pairwise Alignments

Query, 211 a.a., sel1 repeat family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 393 a.a., hypothetical protein from Magnetospirillum magneticum AMB-1

 Score = 50.8 bits (120), Expect = 3e-11
 Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 2/138 (1%)

Query: 72  PSYEFLYGDMLAWGVCVDQDVELGLYYMENAAHQGLPAALEQLGRYYSRGTLVQQDKERA 131
           P  +F  G+M+  G  V+   E+   + + AA QG   A+  LG  Y  GT V++D+ +A
Sbjct: 230 PQAQFNLGNMIQQGRGVESSAEVAAKWFKQAAEQGDAGAIFALGALYEAGTGVERDEIQA 289

Query: 132 IPYLREAAAMGNLNARIQLAELLLRDYGSPLDYEDAYRWLYNSVT--ADQRTHNRIALLR 189
           +   R+AA  G   A   LA +L +  G+  D  +A      +      +  +N  A+L 
Sbjct: 290 VELYRQAADQGLALALHNLANMLRQGRGTDADPFEAAMLCRRAAEQGLPEAQYNYAAMLA 349

Query: 190 QGLERRMPENIIARAKRR 207
            GL     E+   R  RR
Sbjct: 350 LGLGVEKNEDAAIRWFRR 367



 Score = 37.4 bits (85), Expect = 4e-07
 Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 2/86 (2%)

Query: 85  GVCVDQDVELGLYYMENAAHQGLPAALEQLGRYYSRGTLVQQDKERAIPYLREAAAMGNL 144
           GV VD    + LY +  AA  G       LG  Y  G  V Q    A+ + REAA  G+ 
Sbjct: 173 GVAVDPAEAVRLYTL--AAKAGDARGQYSLGVMYDLGLGVAQSNAHALKWFREAAKQGDP 230

Query: 145 NARIQLAELLLRDYGSPLDYEDAYRW 170
            A+  L  ++ +  G     E A +W
Sbjct: 231 QAQFNLGNMIQQGRGVESSAEVAAKW 256



 Score = 32.0 bits (71), Expect = 2e-05
 Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 7/131 (5%)

Query: 23  AADLGEPVPIYSEAELIKLIEENKHLERVKADNCQIVEDIVARATRISLPSYEFLYGDML 82
           AA+ G+   I++   L  L E    +ER +    ++      +   ++L +      +ML
Sbjct: 260 AAEQGDAGAIFA---LGALYEAGTGVERDEIQAVELYRQAADQGLALALHNL----ANML 312

Query: 83  AWGVCVDQDVELGLYYMENAAHQGLPAALEQLGRYYSRGTLVQQDKERAIPYLREAAAMG 142
             G   D D          AA QGLP A        + G  V+++++ AI + R AA  G
Sbjct: 313 RQGRGTDADPFEAAMLCRRAAEQGLPEAQYNYAAMLALGLGVEKNEDAAIRWFRRAAKSG 372

Query: 143 NLNARIQLAEL 153
           +     Q   L
Sbjct: 373 DPRGEAQAEAL 383



 Score = 28.5 bits (62), Expect = 2e-04
 Identities = 15/46 (32%), Positives = 25/46 (54%)

Query: 108 PAALEQLGRYYSRGTLVQQDKERAIPYLREAAAMGNLNARIQLAEL 153
           P A  +LG  Y  G  V++D + A+ +L  +A  GN +A   L ++
Sbjct: 20  PVAQFKLGDLYRLGYQVKRDLDEAVVWLVRSARQGNADAMALLKKM 65



 Score = 26.6 bits (57), Expect = 7e-04
 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 61  DIVARATRISL---PSYEFLYGDMLAWGVCVDQDVELGLYYMENAAHQGLPAALEQLGRY 117
           +IV R   ++L   P  +F  GD+   G  V +D++  + ++  +A QG   A+  L + 
Sbjct: 6   EIVTRYRSLALENDPVAQFKLGDLYRLGYQVKRDLDEAVVWLVRSARQGNADAMALLKKM 65

Query: 118 YSRGTLVQQ 126
            + G  V++
Sbjct: 66  AADGVDVRR 74